AT4G29940.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pathogenesis related homeodomain protein A | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Homeodomain protein (PRHA). Expression of the gene differs in various vegetative and floral plant tissues and is positively influenced by the phytohormone auxin. It is often associated with regions of developing vascular tissue. The prha promoter is highly responsive to the synthetic auxin, naphthalene acetic acid, in transient assays using tobacco protoplasts. The PRHA protein has the capacity to bind to TAATTG core sequence elements but requires additional adjacent bases for high-affinity binding. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pathogenesis related homeodomain protein A (PRHA); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Homeodomain-like (InterPro:IPR009057), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (TAIR:AT3G19510.1). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:14648346..14652710 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87586.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.62 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.06 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 769 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEESETKGRI SQETDKACVS VERIGSTLLS SFVKKGKEVS NKRNSKQNKR KAEEELCSKS RTKKYSRGWV RCEEMEEEKV KKTRKRKSKR QQKDNKVEVD 101: DSLRLQRRTR YLLIKMKMQQ NLIDAYATEG WKGQSREKIR PDKELERARK EILNCKLGLR DAIRQLDLLS SVGSMEEKVI ASDGSIHHDH IFCAECNSRE 201: AFPDNDIILC DGTCNRAFHQ KCLDPPLETE SIPPGDQGWF CKFCDCKIEI IDTMNAQIGT HFPVDSNWQD IFNEEASLPI GSEATVNNEA DWPSDDSKDD 301: DYDPEMRENG GGNSSNVSGD GGGDNDEESI STSLSLSSDG VALSTGSWEG HRLSNMVEQC ETSNEETVCG PRQRRTVDYT QLYYEMFGKD AVLQEQGSED 401: EDWGPNDRRK RKRESDAGST LVTMCESSKK DQDVVETLEQ SERDSVSVEN KGGRRRMFRL PRNAVEKLRQ VFAETELPSK AVRDRLAKEL SLDPEKVNKW 501: FKNTRYMALR NRKTESVKQP GDSKTVSGGD SGPEAVMENN TETNEVQDTL DDTVPPGFDA TNQNILSPCN NNQEEFQQEN VSFPSPTDES QQYLEQNDSS 601: FVLVPHEKQS SEISLKTAVE ENETESKMMK EPHEELSREM SLKTAVEEKE TESKMMEEPH DELNSEMSLS TAVEEKETGS KMTEESHEEL SNEMSLEEKE 701: TGRKMTEEEE LEAVMEMLCR TENKLLDVTQ RLDRFKTPKG RKKLGNSSSP LLEEDSVVYV PIAEIKEKR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)