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AT4G24770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 31-kDa RNA binding protein
Curator
Summary (TAIR10)
Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Required for editing and stability of specific chloroplast mRNAs.
Computational
Description (TAIR10)
31-kDa RNA binding protein (RBP31); FUNCTIONS IN: RNA binding, poly(U) RNA binding; INVOLVED IN: RNA modification, RNA processing, innate immune response; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 31B (TAIR:AT5G50250.1); Has 997248 Blast hits to 498569 proteins in 22111 species: Archae - 21618; Bacteria - 606023; Metazoa - 186637; Fungi - 27654; Plants - 60055; Viruses - 71042; Other Eukaryotes - 24219 (source: NCBI BLink).
Protein Annotations
BioGrid:13868eggNOG:ENOG410IQWUeggNOG:ENOG4111FDYEMBL:AF410318EMBL:AL035356EMBL:AL161562EMBL:AY143865
EMBL:CP002687EMBL:D31712EMBL:D31713EMBL:M94554EMBL:U08467EMBL:X65255EnsemblPlants:AT4G24770
EnsemblPlants:AT4G24770.1entrez:828579Gene3D:3.30.70.330GeneID:828579Genevisible:Q04836GO:GO:0000166GO:GO:0003723
GO:GO:0006396GO:GO:0006397GO:GO:0008266GO:GO:0009451GO:GO:0009507GO:GO:0009535GO:GO:0009570
GO:GO:0009579GO:GO:0009631GO:GO:0009941GO:GO:0016553GO:GO:0030529GO:GO:0043489GO:GO:0045087
hmmpanther:PTHR24012HOGENOM:HOG000276232InParanoid:Q04836InterPro:IPR000504InterPro:IPR012677iPTMnet:Q04836KEGG:ath:AT4G24770
OMA:TMSSETEPaxDb:Q04836Pfam:PF00076Pfam:Q04836Pfscan:PS50102PhylomeDB:Q04836PIR:S28057
PIR:S53492PRIDE:Q04836PRO:PR:Q04836PROSITE:PS50102ProteinModelPortal:Q04836Proteomes:UP000006548RefSeq:NP_194208.1
SMART:SM00360SMR:Q04836STRING:3702.AT4G24770.1SUPFAM:SSF54928TAIR:AT4G24770tair10-symbols:ATRBP31tair10-symbols:ATRBP33
tair10-symbols:CP31tair10-symbols:RBP31UniGene:At.38112UniGene:At.70990UniProt:Q04836
Coordinates (TAIR10) chr4:-:12766223..12767952
Molecular Weight (calculated) 35789.10 Da
IEP (calculated) 4.30
GRAVY (calculated) -0.45
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSIVTSSL KPLAMADSSS STIFSHPSIS STISSSRIRS SSVSLLTGRI NLPLSFSRVS LSLKTKTHLK KSPFVSFVAQ TSDWAEEGGE GSVAVEETEN
101: SLESQDVSEG DESEGDASEG DVSEGDESEG DVSEGAVSER AEFPEPSEEA KLFVGNLAYD VNSQALAMLF EQAGTVEIAE VIYNRETDQS RGFGFVTMSS
201: VDEAETAVEK FNRYDLNGRL LTVNKAAPRG SRPERAPRVY EPAFRVYVGN LPWDVDNGRL EQLFSEHGKV VEARVVYDRE TGRSRGFGFV TMSDVDELNE
301: AISALDGQNL EGRAIRVNVA EERPPRRGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)