AT4G21540.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : sphingosine kinase 1 | ||||||||||||
| Curator Summary (TAIR10) |
Encodes a sphingosine kinase, also has enzyme activity towards other plant long-chain sphingoid bases. Involved in guard cell ABA signalling and seed germination. | ||||||||||||
| Computational Description (TAIR10) |
sphingosine kinase 1 (SPHK1); FUNCTIONS IN: diacylglycerol kinase activity, sphinganine kinase activity, D-erythro-sphingosine kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, seed germination, response to abscisic acid stimulus; LOCATED IN: plant-type vacuole membrane, vacuole; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic domain (InterPro:IPR001206); BEST Arabidopsis thaliana protein match is: Diacylglycerol kinase family protein (TAIR:AT4G21534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11459609..11461654 | ||||||||||||
| Molecular Weight (calculated) | 35550.00 Da | ||||||||||||
| IEP (calculated) | 8.47 | ||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||
| Length | 320 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDRQPEREND ELPSPAIISD RVLVNGVVTP LTLTAEGELR STESGRRKST LAKEILSFVV EGNKVRVKTL VEKGGGICCR GSAGDYARND FVFEPLSDES 101: RKLWSDKFHQ HLVSLGRPKK LLVFVNPFGG KKTARKIFQE EVKPLFEDAN IQLEIQETKY QLHAKEIVRS MDVSKYDGIV CVSGDGILVE VVNGLLERED 201: WKTAIKLPIG MVPAGSGNGM IKSLLEPVGL PCSATSATIS IIRGRTRSLD VATISQGTTK FFSVLMLAWG LVADIDIESE KFRWMGSSED NMLKTIPWTN 301: SICASSWVRK LWATSQLQYR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)