AT4G16835.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G02750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:9472763..9474803 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74822.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.76 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 656 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSRFNIHQP FKRCKFRFFL RSIGNPDTIL VESCSSSSCS SPEPSLVRSD YLTKPSDQDQ IFPLNKIIAR CVRSGDIDGA LRVFHGMRAK NTITWNSLLI 101: GISKDPSRMM EAHQLFDEIP EPDTFSYNIM LSCYVRNVNF EKAQSFFDRM PFKDAASWNT MITGYARRGE MEKARELFYS MMEKNEVSWN AMISGYIECG 201: DLEKASHFFK VAPVRGVVAW TAMITGYMKA KKVELAEAMF KDMTVNKNLV TWNAMISGYV ENSRPEDGLK LFRAMLEEGI RPNSSGLSSA LLGCSELSAL 301: QLGRQIHQIV SKSTLCNDVT ALTSLISMYC KCGELGDAWK LFEVMKKKDV VAWNAMISGY AQHGNADKAL CLFREMIDNK IRPDWITFVA VLLACNHAGL 401: VNIGMAYFES MVRDYKVEPQ PDHYTCMVDL LGRAGKLEEA LKLIRSMPFR PHAAVFGTLL GACRVHKNVE LAEFAAEKLL QLNSQNAAGY VQLANIYASK 501: NRWEDVARVR KRMKESNVVK VPGYSWIEIR NKVHHFRSSD RIHPELDSIH KKLKELEKKM KLAGYKPELE FALHNVEEEQ KEKLLLWHSE KLAVAFGCIK 601: LPQGSQIQVF KNLRICGDCH KAIKFISEIE KREIIVRDTT RFHHFKDGSC SCGDYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)