AT4G16830.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.874 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Hyaluronan / mRNA binding family | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Hyaluronan / mRNA binding family; CONTAINS InterPro DOMAIN/s: Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 1174 Blast hits to 1093 proteins in 244 species: Archae - 2; Bacteria - 52; Metazoa - 515; Fungi - 125; Plants - 182; Viruses - 23; Other Eukaryotes - 275 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:9470979..9472308 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28677.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.83 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||||||||||
| Length | 265 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLHVVVEAVE DLTVVVVVTT VMMVTMDIQG DTLNPQVKEM FQSLLTRGVA GGDGERPRRA FERRSGTGRG SDFKRDGSGR GNWGTPGEEI AAETEAVAGV 101: ETEKDVGEKP AVDDVAADAN KEDTVVEEKE PEDKEMTLDE YEKILEEKKK ALQSLTTSER KVDTKVFESM QQLSNKKSND EIFIKLGSDK DKRKDDKEEK 201: AKKAVSINEF LKPAEGGNYY RGGRGGRGRG GRGRGGVSSG ESGGYRNEAA PAIGDAAQFP SLGGK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)