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AT4G01970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.981
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : stachyose synthase
Curator
Summary (TAIR10)
Encodes a putative stachyose synthetase.
Computational
Description (TAIR10)
stachyose synthase (STS); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: Raffinose synthase family protein (TAIR:AT5G40390.1); Has 728 Blast hits to 457 proteins in 130 species: Archae - 54; Bacteria - 106; Metazoa - 0; Fungi - 85; Plants - 472; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
BRENDA:2.4.1.82CAZy:GH36EC:2.4.1.82eggNOG:ENOG410IKHDeggNOG:ENOG410YCZ1EMBL:AC007138EMBL:AK229121
EMBL:AL161493EMBL:CP002687EnsemblPlants:AT4G01970EnsemblPlants:AT4G01970.1entrez:828186Gene3D:3.20.20.70GeneID:828186
Genevisible:Q9SYJ4GO:GO:0005975GO:GO:0006979GO:GO:0047268GO:GO:0047274GO:GO:0080167Gramene:AT4G01970.1
gramene_pathway:2.4.1.-gramene_pathway:2.4.1.67gramene_pathway:PWY-5337gramene_pathway:PWY-5338gramene_pathway:PWY-5343hmmpanther:PTHR31268hmmpanther:PTHR31268:SF8
HOGENOM:HOG000237551InParanoid:Q9SYJ4InterPro:IPR008811InterPro:IPR013785InterPro:IPR017853KEGG:ath:AT4G01970KO:K06611
ncoils:CoilOMA:AYNSMWMPaxDb:Q9SYJ4Pfam:PF05691Pfam:Q9SYJ4PIR:C85025PRIDE:Q9SYJ4
PRO:PR:Q9SYJ4ProteinModelPortal:Q9SYJ4Proteomes:UP000006548RefSeq:NP_192106.3STRING:3702.AT4G01970.1SUPFAM:SSF51445TAIR:AT4G01970
tair10-symbols:AtSTStair10-symbols:STSUniGene:At.34347UniProt:Q9SYJ4
Coordinates (TAIR10) chr4:-:854073..856953
Molecular Weight (calculated) 98016.60 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.18
Length 876 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPLHESLSS INDVIESKPL FVPITKPILQ PNSFNLSEGS LCAKDSTPIL FDVPQNVTFT PFSSHSISTD APLPILLRVQ ANAHKGGFLG FTKESPSDRL
101: TNSLGRFEDR EFLSLFRFKM WWSTAWIGKS GSDLQAETQW VMLKIPEIDS YVAIIPTIEG AFRASLTPGE KGNVLICAES GSTKVKESSF KSIAYIHICD
201: NPYNLMKEAF SALRVHMNTF KLLEEKKLPK IVDKFGWCTW DACYLTVDPA TIWTGVKEFE DGGVCPKFVI IDDGWQSINF DGDELDKDAE NLVLGGEQMT
301: ARLTSFKECK KFRNYKGGSF ITSDASHFNP LKPKMLIYKA TERIQAIILR RKLVKESGEQ DLTELDEKIK ILSEELNAMF DEVEKEESLG SDDVSGSGMA
401: AFTKDLRLRF KSLDDIYVWH ALCGAWNGVR PETMMDLKAK VAPFELSPSL GATMADLAVD KVVEAGIGLV HPSKAHEFYD SMHSYLASVG VTGAKIDVFQ
501: TLESLAEEHG GRVELAKAYY DGLTESMIKN FNGTDVIASM QQCNEFFFLA TKQISIGRVG DDFWWQDPYG DPQGVYWLQG VHMIHCSYNS IWMGQMIQPD
601: WDMFQSDHVC AEYHAASRAI CGGPVYLSDH LGKASHNFDL IKKLAFFDGT IPRCVHYALP TRDSLFKNPL FDKESILKIF NFNKFGGVIG TFNCQGAGWS
701: PEEHRFKGYK ECYTTVSGTV HVSDIEWDQN PEAAGSQVTY TGDYLVYKQQ SEEILFMNSK SEAMKITLEP SAFDLLSFVP VTELVSSGVR FAPLGLINMF
801: NCVGTVQDMK VTGDNSIRVD VKGEGRFMAY SSSAPVKCYL NDKEAEFKWE EETGKLSFFV PWVEESGGIS HLSFTF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)