AT3G60240.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : eukaryotic translation initiation factor 4G | ||||||||||||
| Curator Summary (TAIR10) |
protein synthesis initiation factor 4G (EIF4G). A mutation in this gene (cum2-1) results in decreased accumulation of CMV coat protein in upper, uninoculated leaves. Likely affects cell-to-cell movement of the virus, also affects TCV multiplication. | ||||||||||||
| Computational Description (TAIR10) |
eukaryotic translation initiation factor 4G (EIF4G); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: response to virus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT2G24050.1); Has 9326 Blast hits to 6766 proteins in 561 species: Archae - 16; Bacteria - 1112; Metazoa - 4125; Fungi - 1859; Plants - 706; Viruses - 74; Other Eukaryotes - 1434 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:22261842..22268295 | ||||||||||||
| Molecular Weight (calculated) | 187732.00 Da | ||||||||||||
| IEP (calculated) | 7.77 | ||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||
| Length | 1725 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSYNQSRPDR SETQYRRTGR STGNQQQQQQ HRSSSAAGYG KGAGAPGSAP APSTYPDNSS LSSNRSFKKP GNAQGGGQPR VNLPPVNHPN NHNNGPNAHS 0101: RSQGEPGVGG PTNPTESFNR NTGPIPKAPT SQSTVMSSKI NETPNTAKVA ASGDASQAFP LQFGSLGPDL MVPARTTSAP PNMDDQKRAQ MQQSSLRTAS 0201: NVPASVPKKD SSNKGADNQL MRKEGHNPSS EKADIQVPHI APPSQTQKSP ITNIRMPSVQ TPYQHTQVPH PVHFGGPNMH MQTPVTATSF QMPMPMALSM 0301: GNTPQIPPQV FYQGHPPHPM HHQGMMHQAQ GHGFATPMGA QIHPQLGHVG VGLSPQYPQQ QGGKYGGARK TTPVKITHPD THEELRLDRR GDPYSEGDST 0401: ALKPHSNPPP RSQPVSSFAP RPVNLVQPSY NSNTMIYPPV SVPLNNGPMS SAQAPRYHYP VIDGSQRVQL INQPAHTAPQ LIRPAAPAHL SSDSTSSVKA 0501: RNAQNVMSSA LPVNAKVSVK PAGVSEKLGS PKDRSHGEVN ISLSQKNVEA CSLSSSQQPK PSFVSGVPNS SAPPAKSPVE TVPLAKSSVE TVPPVKSSVE 0601: TAPVTTTEIR RAEMVSESIS VEDQTCKVEP PHNLTENRGQ TMPDSLVSDP ETATVAAKEN LSLPATNGFR KQLLKVSTTS DAPTSDSVDT SIDKSTEGSS 0701: HASSEISGSS PQEKDLKCDN RTASDKLDER SVISDAKHET LSGVLEKAQN EVDGATDVCP VSEKLAVTDD TSSDLPHSTH VLSSTVPLGH SETHKSAVET 0801: NTRRNTSTKG KKKIKEILQK ADAAGTTSDL YMAYKGPEEK KESSNVVHDV SNQNLLPAIP QAVEAIVDTE PVKNEPEDWE DAADVSTPKL ETADNSVNAK 0901: RGSSDEVSDN CINTEKKYSR DFLLKFADLC TALPEGFDVS PDIANALIVA YMGASHHEHD SYPTPGKVMD RQASGARLDR RPSNVAGDDR WTKNQGSLPA 1001: GYGGNVGFRP GQGGNSGVLR NPRMQGPIIS RPMQPVGPMG GMGRNTPDLE RWQRGSNFQQ KGLFPSPHTP MQVMHKAERK YQVGTIADEE QAKQRQLKSI 1101: LNKLTPQNFE KLFEQVKSVN IDNAVTLSGV ISQIFDKALM EPTFCEMYAD FCFHLSGALP DFNENGEKIT FKRLLLNKCQ EEFERGEKEE EEASRVAEEG 1201: QVEQTEEERE EKRLQVRRRM LGNIRLIGEL YKKRMLTEKI MHACIQKLLG YNQDPHEENI EALCKLMSTI GVMIDHNKAK FQMDGYFEKM KMLSCKQELS 1301: SRVRFMLINA IDLRKNKWQE RMKVEGPKKI EEVHRDAAQE RQTQANRLSR GPSMNSSGRR GHMEFSSPRG GGGMLSPPAA QMGSYHGPPQ GRGFSNQDIR 1401: FDDRPSYEPR MVPMPQRSVC EEPITLGPQG GLGQGMSIRR PAVASNTYQS DATQAGGGDS RRPAGGLNGF GSHRPASPVT HGRSSPQERG TAYVHREFAS 1501: LSRASDLSPE VSSARQVLQG PSATVNSPRE NALSEEQLEN LSLSAIKEYY SARDENEIGM CMKDMNSPAY HPTMISLWVT DSFERKDKER DLLAKLLVNL 1601: VKSADNALNE VQLVKGFESV LKTLEDAVND APKAAEFLGR IFGKSVTEKV VTLTEIGRLI QEGGEEPGSL IEFGLGGDVL GSVLEMIKTE AGEETLVEIR 1701: RSSGLRIENF KPHAPNRSKI LEKFT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)