AT3G54790.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.506 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT2G23140.2); Has 7003 Blast hits to 4423 proteins in 282 species: Archae - 0; Bacteria - 30; Metazoa - 1363; Fungi - 548; Plants - 4306; Viruses - 3; Other Eukaryotes - 753 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:20281830..20284255 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79714.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.88 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 724 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVLLLKLLKP LLDEVVDCKI PSDDCLYKGC EDLDSVVNQA REFLEDWSPK LSKLFGVFQC EVLLGKVQTC SLEISRILLQ LSQSSPVTSS VQSVERCVQE 101: TESFKQEGTL MELMENALRN QKDDITSLDN NHLESIIQML GLISNQDLLK ESITVEKERI RSQASKSEED MEQTEQLIEL VLCIREHMLK TEFLEVAKGI 201: SIPPYFRCPL STELMLDPVI VASGQTFDRT SIKKWLDNGL AVCPRTRQVL THQELIPNYT VKAMIASWLE ANRINLATNS CHQYDGGDAS SMANNMGSQD 301: FNRTESFRFS LRSSSLTSRS SLETGNGFEK LKINVSASLC GESQSKDLEI FELLSPGQSY THSRSESVCS VVSSVDYVPS VTHETESILG NHQSSSEMSP 401: KKNLESSNNV NHEHSAAKTY ECSVHDLDDS GTMTTSHTIK LVEDLKSGSN KVKTAAAAEI RHLTINSIEN RVHIGRCGAI TPLLSLLYSE EKLTQEHAVT 501: ALLNLSISEL NKAMIVEVGA IEPLVHVLNT GNDRAKENSA ASLFSLSVLQ VNRERIGQSN AAIQALVNLL GKGTFRGKKD AASALFNLSI THDNKARIVQ 601: AKAVKYLVEL LDPDLEMVDK AVALLANLSA VGEGRQAIVR EGGIPLLVET VDLGSQRGKE NAASVLLQLC LNSPKFCTLV LQEGAIPPLV ALSQSGTQRA 701: KEKAQQLLSH FRNQRDARMK KGRS |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)