AT3G52140.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tetratricopeptide repeat (TPR)-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19333232..19341295 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 153697.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.33 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1407 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAGKSNKSKA KRAAQSTTTN STTDVKSDAP APPVAATVPA TAPVTAAAAP VATAAAPVTA PDNGTLTAVD SAVPEANEVA PTIPKADESE SQVENNDAQP 0101: KQGELRLYPV SVKTQSGGKM ELQLNPGDSV MDIRQFLLDA PETCYFTCYE LLLRNKDGET HHLEDYNEIS EVADITIGGC SLEMVAALYD DRSIRAHVHR 0201: ARDLLSLSTL HSSLSTTLAL QYDAALNKVQ NPGDKPKSDV PELECLGFME DVPGSLKKLI NSTSEEIRSV ENIVFSSFNP PPSHRRLVGD LIYLDVVTLE 0301: GNKYCITGTT KTFYVNSSSG NILDPRPSKS GFEAATLIGL LQKLSSKFKK AFREVMEKKA SAHPFENVQS LLPPHSWLRT YPVPDHKRDA ARAEEALTIS 0401: YGSELIGMQR DWNEELQSCR EFPHTSPQER ILRDRALYKV SSDFVDAALN GAIGVISRCI PPINPTDPEC LHMYVHNNIF FSFAVDADIE QLSKKRPSNQ 0501: MTEKVSSSEK VSCTEGTCDN EEHNNCNEAP LVENEQATYA SANNDLKGTK LYQEADVPGL YNLAMAIIDY RGHRVVAQSV LPGILQGDKS DALLYGSVDN 0601: GKKICWNEDF HAKVLEAAKL LHIKEHSVID ASETVFKLAA PVECKGIVGS DNRHYLLDLM RVTPRDANYT GPESRFCVLR PELITSFCQA ESLEKSKFKT 0701: KADEGGDDSS NVSADTSKVG DALIDGEANG ASNSDQKSIS DKQNTTAEDY AAGSSESSKS CDQIAFNPNV FTDFTLGGNQ EEIAADEENV KKVSSYLVDV 0801: VLPKFIEDLC TLEVSPMDGQ TLTEALHAHG VNVRYIGRVA NGVKHLPHLW DLCLNEITVR SAKHILKDIL RDIEDHDIGS AVSHFLNCFF GNYQTAGGKA 0901: SANSSTAKNQ KKFFGADQPI TKKGQGRGKG KASSKKSFSS YMMVDSNILW SDIQEFAKAK YEFELPELSR TTAKKVSVLR NLCQKVGVSI AARKYDFSAN 1001: TPFETSDILD LRPVIKHSVP VCSEAKDLVE MGKVQLAEGM LSESYTFFSE AFSILQQVTG PMHREVANCC RYLAMVLYHA GDMAGAIMQQ HKELIINERC 1101: LGLDHPDTAH SYGNMALFYH GLNQTELALQ NMGRALLLLG LSSGPDHPDV AATFINVAMM YQDMGKMDTA LRYLQEALKK NERLLGPEHI QTAVCYHALA 1201: IAFNCMGAFK LSHQHEKKTY DILVKQLGDD DSRTRDSLNW MKTFKMRELQ MTAQKQKGQA ANAANTQKAI DLLKAHPDLI HAFQNAAATG RTNALNSAVL 1301: GETQPRGRGF DERAARAAAE VRKKAAAKGL LVRPQGGVPV QAMPPLSQLQ NMINTATVSS EKGGENGEAK VQEKKESSEN GKTENLAPAG LGAGLTSLDK 1401: KKQKAKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)