AT3G49900.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.653 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phototropic-responsive NPH3 family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G13600.1). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18500635..18502614 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58334.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.61 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||
| Length | 520 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKRWTNLGFV DTIYEDEDYV DHHSSSLSSS SSSLSLSPKQ PINLSSSPSM ELESRVHKWS LANNSKPDVF VNVGGTRFHL HKDPLSKSGY LKRHLTGVNE 101: LTLSPPLNIT AETFSLVAGF CYGAHIELTP SNVVSLRIAV EVLLITEADD GGRVRDSLRN LTESYLRRVV FVNVDYIQIV LRSCLLLLPE SETTAFLIGR 201: CVEALMEIGD GDCVNEFLEE AVKLPAGDFN VVADAVQQRF PRHDLLYRIV DAYVKVKREH DGEMTEEEKV QICNSIDCDK LSPPLLLHAV QNPKMPLRFI 301: VRAMLQEQLN TRHSIMVAAV AASCAAPTGV RHREIATEAR DSSVTLGSLL QRDTAARQNC RLRAAMNSTS SRIESLEKEL DTMKRFLSKE SEKQKSDRNI 401: VESRSRSVMD SARSASFHCV HQPSNVNKTQ RGDRGSVSNL STTYRRRRAS PPQAQPQKSI GKRLIMGIKN AFSTSSKQVP KKNAYAVEEI YDGLEDFVWI 501: KDDNDDNISE ELHSHYIKNK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)