AT3G49400.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.995 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:18319249..18324373 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 97730.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.63 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||
| Length | 874 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASRFQEASL VTSPSYPNAV AWSSENLIAV AAGHLVIIIN PALPTGPRGL ITISDAELYQ IGRVRSQDLL TGGLLPSSLK RERSPCVRSL SWSEIGMSPN 101: HGCLLAVCTA EGRVKLYRPP YSDFCAEWIE IVDISKMLYE NLSSMNFGES KNPSTSLSKD QVVEHDHEED ERISSLKARK RRKTSANNIN LHEKNYTDRA 201: SCSKQDSKAE HNVLEIEVYK QASNGQDRRS LPKALKKCSQ EISPQTYVSR EALLSSHSVA WSSLLRFSSE SSCGNMLRFS LLAIGSKSGS VSIWKVHAPE 301: CYHIERSNVS PMVELTAIVQ THSSWVSTMS WGIFGCDSSN PQVVLVTGSC DGSVKIWMSN KEDLQNSVEV YKSSFFLLKE VVAVNPVQVS TLSFVVSNHY 401: NAMHLAIGKG SGSFEVWKCE ISTRKFEQIV STNAHNQVDN YVRSWILCEN AISEVPIPAN TPGLSSTTDL PDDFLSCLGV ALSPGNLAVA LVRNFNVELL 501: NPMYQARSQK AAVEFLWNGA QQSGESEDST ETVTEAILGF SKNEFANWES NILWSLKEFN YLNKPLVLWD MVAAMLAFKQ SMPEFVELVL TKWLSVSYLG 601: FHDDISMEDL VPKITKRFSD VPSRLLHILN VISRRVMLSE LKTEEINRKL QGQRTNDEGE IDLWLKLLQE SERELRERLV GLSFSAYLLA ESSQGTISPP 701: SWNWRPAGLA LLQQWVEINR DIVHSQLETL SLEVKSSRTR SSNSTETALE EEKCPYCAAP VNFHSAEEAF CESSHQKKKK SKDKERCDES HKLERCCVSM 801: QVCPPTPLWF CKCCNRMTLE LAPETLFALP SFPSDLKSLP KSSFSKVASK PFCLFCGVLL QRKQPEFLLS ASPV |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)