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AT3G28860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26748395 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ATP binding cassette subfamily B19
Curator
Summary (TAIR10)
Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1.
Computational
Description (TAIR10)
ATP binding cassette subfamily B19 (ABCB19); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, auxin efflux transmembrane transporter activity; INVOLVED IN: in 14 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATP binding cassette subfamily B1 (TAIR:AT2G36910.1); Has 832220 Blast hits to 388750 proteins in 4155 species: Archae - 14331; Bacteria - 653917; Metazoa - 17455; Fungi - 11958; Plants - 9253; Viruses - 33; Other Eukaryotes - 125273 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G28860-MONOMERBioGrid:7848eggNOG:COG1132eggNOG:KOG0055EMBL:AF540384EMBL:AK117168EMBL:AP000386
EMBL:CP002686EnsemblPlants:AT3G28860EnsemblPlants:AT3G28860.1entrez:822519Gene3D:3.40.50.300GeneID:822519Genevisible:Q9LJX0
GO:GO:0005524GO:GO:0005886GO:GO:0008361GO:GO:0009637GO:GO:0009639GO:GO:0009640GO:GO:0009733
GO:GO:0009734GO:GO:0009926GO:GO:0009958GO:GO:0010160GO:GO:0010218GO:GO:0010315GO:GO:0010329
GO:GO:0010540GO:GO:0010541GO:GO:0016021GO:GO:0042626GO:GO:0043481GO:GO:0048364GO:GO:0048443
GO:GO:0048527GO:GO:0060918Gramene:AT3G28860.1hmmpanther:PTHR24221hmmpanther:PTHR24221:SF149InParanoid:Q9LJX0IntAct:Q9LJX0
InterPro:IPR003439InterPro:IPR003593InterPro:IPR011527InterPro:IPR017871InterPro:IPR027417iPTMnet:Q9LJX0KEGG:ath:AT3G28860
KO:K05658MINT:MINT-1701415OMA:DIATHRIPaxDb:Q9LJX0Pfam:PF00005Pfam:PF00664Pfam:Q9LJX0
Pfscan:PS50893Pfscan:PS50929PhylomeDB:Q9LJX0PRIDE:Q9LJX0PRO:PR:Q9LJX0PROSITE:PS00211PROSITE:PS50893
PROSITE:PS50929ProteinModelPortal:Q9LJX0Proteomes:UP000006548RefSeq:NP_189528.1scanprosite:PS00211SMART:SM00382SMR:Q9LJX0
STRING:3702.AT3G28860.1SUPFAM:SSF52540SUPFAM:SSF90123TAIR:AT3G28860tair10-symbols:ABCB19tair10-symbols:ATABCB19tair10-symbols:ATMDR1
tair10-symbols:ATMDR11tair10-symbols:ATPGP19tair10-symbols:MDR1tair10-symbols:MDR11tair10-symbols:PGP19TCDB:3.A.1.201.6TMHMM:TMhelix
UniGene:At.24939UniProt:Q9LJX0
Coordinates (TAIR10) chr3:-:10870287..10877286
Molecular Weight (calculated) 136796.00 Da
IEP (calculated) 8.37
GRAVY (calculated) 0.13
Length 1252 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)