AT3G21430.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA binding | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ALWAYS EARLY 3 (ALY3); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP ;Myb-like DNA-binding domain (TAIR:AT3G05380.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7544800..7552841 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 127576.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1132 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAPSRSKKSK YKKKPRAKAV SPHKDEESMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR KFGKEWKKVA GFVHSRSAEM VEALYTMNKA YLSLPEGTAS 0101: VVGLTAMMTD HYSVLHGGSD SEQENNEGIE TPRSAPKRSR VKSSDHPSIG LEGLSDRLQF RSSSGFMPSL KKRRTETMPR AVGKRTPRIP ISYTLEKDTR 0201: ERYLSPVKRG LNQKGDDTDD DMEHEIALAL AEASQRGGST KNSHTPNRKA KMYPPDKKGE RMRADIDLAI AKLHATDMED VRCEPSLGST EADNADYSGG 0301: RNDLTHGEGS SAVEKQQKGR TYYRRRVGIK EEDAKEACSG TDEAPSLGAP DEKFEQEREG KALKFTYKVS RRKSKKSLFT ADEDTACDAL HTLADLSLMM 0401: PETATDTESS VQAEEKKAGE AYVSDFKGTD PASMSKSSSL RNSKQRRYGS NDLCNPELER KSPSSSLIQK RRQKALPAKV RENVLKDELA ASSQVIEPCN 0501: SKGIGEEYKP VGRGKRSASI RNSHEKKSAK SHDHTSSSNN IVEEDESAPS NAVIKKQVNL PTKVRSRRKI VTEKPLTIDD GKISETIEKF SHCISSFRAR 0601: RWCIFEWFYS AIDYPWFARQ EFVEYLDHVG LGHVPRLTRV EWGVIRSSLG KPRRFSEQFL KEEKEKLYLY RDSVRKHYDE LNTGMREGLP MDLARPLNVS 0701: QRVICLHPKS REIHDGNVLT VDHCRYRIQF DNPELGVEFV KDTECMPLNP LENMPASLAR HYAFSNYHIQ NPIEEKMHER AKESMLEGYP KLSCETGHLL 0801: SSPNYNISNS LKQEKVDISS SNPQAQDGVD EALALQLFNS QPSSIGQIQA READVQALSE LTRALDKKEL VLRELKCMND EVVESQKDGH NNALKDSESF 0901: KKQYAAVLFQ LSEINEQVSL ALLGLRQRNT YQENVPYSSI RRMSKSGEPD GQLTYEDNNA SDTNGFHVSE IVESSRIKAR KMVYRAVQAL ELLRKDENNN 1001: VNMEEAIDFV NNQLSIDQTE GSSVQQTQGG QDQRLPSTPN PPSSTPANDS HLNQPDQNDL QVPSDLVSRC IATLLMIQKC TERQFPPSEV AQVLDSAVAS 1101: LQPCCSQNLP IYTEIQKCMG IIRNQILALV PS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)