AT3G17920.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.876 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Outer arm dynein light chain 1 protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Outer arm dynein light chain 1 protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT1G48540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6137838..6142023 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100038.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.66 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||
| Length | 880 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVEGFHVISS EVSGRLKDAL RHVFASRIAE IKDSPQWNKL AFISCACNRL VLMDESLQLL PAVESLDLSR NKFAKVDNLR RCNKLKHLDL GFNQLRKISH 101: LSEVSCHLVK LVLRNNALTT LRGIENLKSL EGLDVSFNLI SDFSELEFLG SLSFLTDLWL EGNPICCARW YRAHVLSYVY LPNDLKLDGK HIGNREFWKR 201: QVVVTRRKSQ PASYGFYSPA RDEADDEGSF TRKKTKIYRL ASIDSEEEST YVNSDQESAS CEPETQSKEE NIKSDHEADV FGLICKVEQL KKERSVLWLR 301: EFKEWIDHPS EDFVDVSKNG SSTDSEQKYY MKNRNGPKHH GETMRYTPGP LPSFQITDLN QKHQAFFLDG KPDENGNMST LDASQDMTGS FSPSSPPHYQ 401: KDVLHRRQNL VEEILQISAD SYSVASSDSS CSENENYDSE QSNPEQDTLK DHLSGNRGED TSLLDSQPEK SSIIKSWKIE DSFKAKTTNF LSGLHKSELA 501: SGVNQIYRWF DKKQSKRKPK KRNVSPLEEY SFIKKGETSH RSDADIIDSC EDEYISDHFQ EGSLTTGCNS KRSTRFLETE KSLEGMGGLV EEFFTTTLSD 601: SSNDETCRIY VSCDCILQQE STYKQREVVL LLSSQEKLYV LLVGVSTDLQ ESSLSLLCSH TIGDIRDVSV GLGLQVVRLR FREDAEYIFM TASIEKTTVL 701: LNIIKFLDYQ VTESKFSLKS LENVQVELFE KEICSGLKLS IFQYIVLHFQ SSTFGEVSWL PRSLFVAGGH LFICNEDFRQ LSFLPTDDAS SSPYFSLDSS 801: CSISDIFEMV VESRGSSCLS LKVKQKDSTF QSSQKRTVNS VTWKLKLLSP ECVPKFVALV NGLHPDSTEF PLFVRHLGER |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)