AT3G17205.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.947 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ubiquitin protein ligase 6 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ubiquitin protein ligase 6 (UPL6); CONTAINS InterPro DOMAIN/s: HECT (InterPro:IPR000569), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 7 (TAIR:AT3G53090.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:5873528..5881132 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 116179.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.41 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1015 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFFSGDPSTR KRVDLGGRST KERDARKLLE QTRMERNRRL LQKQQNSAAL KIQKFFRGRR SMAIERSKVR HDFCETYGNN CQNVDRHCFE PGSSFLRQFL 0101: FFFKAQNSGD FVILVETCRL LQSFVDSSGD IVSLFSGLDY SSEHNLVDFR VKKLAFTCIE AIHQNRNRLR DQLLVTPEEA SISTAILMEA VSLLLDPKLP 0201: WVCKIVSYLQ KRKVFKLVRE MVTTAKESPR GKTMTGNILS LERVLILIVP HIGREPCCCT VVDPRWSFSS MILTIPLIWK LFPNLKVVFA NPSLSQHYIH 0301: QMASCIQKDT CVLPMETSPE FPGYACLLGN TLDTANVVLS QPECSLDMAI DIALVATFFL ETLPPVKSSE GESRQGLVLN KALEQQITNA IDSRFLLQLT 0401: NVLFRQVSLG MQSYDEDKEA LAIGTASSFL YAAFNTLPLE RIMTILAYRT ELVAVLWNYM KRCHENQKWS SMPKLLAYLP GDAPGWLLPL VVFCPVYKHM 0501: LMIVDNEEFY EREKPLSLQD IRLLIIILKQ ALWQLLWVNP LTQPNTGKSV SNDLSKKNPI ELIQNRMGIV VSELLSQLQD WNNRKQFTSS SDFQADSVNE 0601: YFISQAIMEG TRANYILMQA PFLIPFTSRV KIFTTQLATA RQSHGSQGIF ARNRFRIRRD HILEDAYNQM SALSEDDLRS SIRVTFVNEL GVEEAGIDGG 0701: GIFKDFMEKI TRAAFDVQYG LFKETADHML YPNPGSGMIH EQHLQFFHFL GSLLAKAMFE GILVDIPFAT FFLSKLKQKY NYLNDLPSLD PELYRHLIFL 0801: KRYKGDISDL ELYFVILNNE YGERTEEELL PGGQDMRVTN ENVITFIHLV SNHRLNFQIR QQSSHFLRGF QQLIPKEWID MFNEHELQVL ISGSVDSLDI 0901: DDLRNNTNYA GGYHAGHYVI DMFWEVMKSF STENQKKFLK FVTGCSRGPL LGFKYLEPAF CIQRAAGSAS NESVDRLPTS ATCMNLLKLP PYQSKELLET 1001: KLMYAISAEA GFDLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)