AT3G13000.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.986 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF547 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function, DUF547; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G16750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4158214..4160989 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66017.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.44 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||
| Length | 582 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYDSQVLKSK YNPFLRRSHS GKKFQGTVTM SEGRETCEES TSGESFPYRF QLEEDVKRLQ LQLQQEIDLH TFLESVMEKD PWELSYSSSV PHPAQELLSN 101: IVTLETAVTK LEQEMMSLNF QLSQERNERR LAEYQLTHSA SPLNSSSSLR YLNQSDSELH QSAEDSPSQD QIVHYQESSS ESSPAESTVE QTLDPSNDFL 201: EKRLMRKTNA RKLPRGMPPK YLWDQPNLLS EEMVRCMKNI FMSLADPTAT SKASSNESHL SPVSPRGHLS SSASWWPSTE RSMISSWVQS PQIDIQNNAN 301: VLATGDVFDP YRVRGKLSWA EIGNYSLASE VSWMSVGKKQ LEYASGALKK FRTLVEQLAR VNPIHLSCNE KLAFWINLYN ALIMHAYLAY GVPKSDLKLF 401: SLMQKAAYTV GGHSYTAATM EYVILKMKPP MHRPQIALLL AIHKMKVSEE QRRASIDTHE PLLGFALSCG MYSSPAVRIY SAKGVKEEML EAQRDFIQAS 501: VGLSSKGKLL LPKMLHCYAK SLVEDSNLGV WISRYLPPHQ AAFVEQCISQ RRQSLLASRN CGILPFDSRF RYLFLPDDNT SL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)