AT3G09370.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : myb domain protein 3r-3 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
putative c-myb-like transcription factor (MYB3R3) mRNA, | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
myb domain protein 3r-3 (MYB3R-3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-5 (TAIR:AT5G02320.2); Has 14047 Blast hits to 8583 proteins in 559 species: Archae - 0; Bacteria - 0; Metazoa - 1217; Fungi - 1118; Plants - 8582; Viruses - 6; Other Eukaryotes - 3124 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:2879534..2882128 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56740.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.57 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||||||||||||||||||
| Length | 510 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSTFNPAAS SPDEMMDLQE ETGEVKIEDQ CVENKQSTPA SCSSVSEGSA GSSHKSPTIA SPATVSPTHR YLGRTSGPIR RAKGGWTPEE DETLRQAVDT 101: FKGKSWKNIA KSFPDRTEVQ CLHRWQKVLN PDLIKGPWTH EEDEKIVELV EKYGPAKWSI IAQSLPGRIG KQCRERWHNH LNPDINKDAW TTEEEVALMN 201: AHRSHGNKWA EIAKVLPGRT DNAIKNHWNS SLKKKSEFYL LTGRLPPPTT TRNGVPDSVT KRSSSAQKRV FGSVAQTSSV TTDVNNLAED GNGQINSSVP 301: VEEVVAASRM TSLNEYARSP QLPNPEPLPE NGGAANNGYH LYYTPQIDYY RASEVDTQRM YGNECGCSPS ASPVSFFTPP PCRNVHSNGS TPRSPESYLR 401: EAGRTYPNTP SIFRKRRPRV VVQDNNNAKK TDEAKEVDQK VNDGKDSSEI QNNGSNAYNL SPPYRIRSKR TAVFKSRQLE FISREEEKAD DETKSSEKDM 501: LIDGDSQLLG |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)