AT3G03790.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.710 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:963195..968011 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 120606.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.57 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1099 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MELSVSPQTQ KMNLQTPRKS SLSGSRKDLW FAIREGSLVD VDSALSILKK TGGNINLRNA YGLTPLHIAV WRNHIPIVRR LLAAGADPDA RDGESGWSSL 0101: HRALHFGHLA VASVLIDSGA SFTLEDIKLR TPVDLVSGPV AQVIGEQQSS VATEVFSWGN GANYQLGTGN QHVQKVPGRV DSLHGCFIKL VSAAKFHSVA 0201: ISTHGEVYTW GFGRGGRLGH PEFDIHSGQA AVITPRQVIS GLGSRRVKAV AAAKHHTVIA TEGGDVYTWG SNREGQLGYT SVDTQATPRK VTSLKAKIVA 0301: VSAANKHTAV VSDCGEVFTW GCNKEGQLGY GTSNSASNYS PRLVDYLKGK VFTAIASSKY HTLVLRNDGE VYTWGHRLVT PRRVIISRNL KKAGNTLLNF 0401: HRRRPLRLTA IAAGMVHSLA LAEDGAFFYW VSSDSNLRCQ QLHSLHGKTV VSISAGKYWA SAVTSTGEVY MWDGKNGKDI APSLSRLHNL KRATTVAVGE 0501: THLLVVGSLY HPAYAPIVLK KSQTLQADKC REEENEELDE GFMFDDVESV NVLQSVQYDN PKERIVPSLK SLCEKVAAEC IVEPRNAIQL LEIADSLGAE 0601: DLKKYCEDIV IRNLDFILTF SPQSIANTSP DVLANLEKLL DDRSSETWSS RPLPTPTATF PVVIDSEEEE SESDILRTRD SHVKHFSSIG GTRMDSFLQP 0701: EDELTQHNSK EVRALRKKLQ QIEILEAKQS RGQLLDGQQI AKLQKKLDIE SSLVELGIPV EEFPEAKATT ALPLEGKANK KGKKKKKGNQ RFVQVETFPE 0801: FGEVKVEIDT MQDKEIEEIC EAIKPKGGKT MLDTTMISGF PKESDFVSLS QKKDNPPDSP RSKKLATAAN KKKNRKGGLS MFLTGALDDV PKPVVAPPPR 0901: PKIEGPVWGG AKISKGLSSL RDIQDEQSKT RSHEPVRTTK NQSGDDSPGK SEGKILLSSF LTSKPIPMEP AKSLQQSDVE KGTPPWASSE TPRKLSRPSL 1001: RDIQMQEVKK QQSLSHSPKT KTSGFTVATG QGSPSDSPGT NRWFKPEIDA PSAIRSIQIE EKAMKDLRRF YSSVKMMSPL FIGSPLNWSA IFFLFLSMC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)