AT2G47350.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HIT zinc finger ;PAPA-1-like conserved region | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HIT zinc finger ;PAPA-1-like conserved region; CONTAINS InterPro DOMAIN/s: PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: PAPA-1-like family protein / zinc finger (HIT type) family protein (TAIR:AT3G06660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:19434588..19436281 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41605.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.77 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.17 | ||||||||||||||||||||||||||||
| Length | 374 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDNGVAYCD GMTNTVRKKR SLTCRRPRPE GSSVLTSSDR FSKISSDDIP AFDTNPRRKE FSLSHCISRA ESIAESERGN NDFRRREIIN RNKRSTEGVL 101: APASSKYPSR EVEGNGMING KGTDSGELEG ETKRMKLKIG GVSRLVHANG SSRKSSKPVT DTIRSNHDLQ ESSEDCNSPL DKKADLEGVT WDAEIDGSMT 201: GRRKQEEPSG LVRKSKRAPK KRVFDSDDDS DDEIRYLEKL KYKRVSVCNE DTESGRKQLT PSGITNGENS GKKKAVSEQA SEDMDCAEEI ETASDEKEIG 301: NDNKRESTMT SRQRALASGR SSAIDFSDGL PPTSRRKKET LSEMEQQLKK AEAAQRRKVQ IEKAARESEV GRGH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)