AT2G46450.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.805 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cyclic nucleotide-gated channel 12 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cyclic nucleotide-gated channel 12 (CNGC12); CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Ion transport (InterPro:IPR005821), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channels (TAIR:AT2G46440.1). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:19065845..19068364 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71992.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.93 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||
| Length | 626 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNHRRSKFAR IDSMGVDGKL KSVRGRLKKV YGKMKTLENW RKTVLLACVV ALAIDPLFLF IPLIDSQRFC FTFDKTLVAV TIAPRSQASL RGEIVVHSKA 101: TLKTRLLFHF IVDIISVLPI PQVVVLTLIP LSASLVSERI LKWIILSQYV PRIIRMYPLY KEVTRAFGTV AESKWAGAAL NLFLYMLHSY VFGAFWYLSS 201: IERKSKCWRA ACARTSDCNL TVTDLLCKRA GSDNIRFLNT SCPLIDPAQI TNSTDFDFGM YIDALKSGVL EVKPKDFPRK FVYCFWWGLR NISALGQNLE 301: TSNSAGEIFF AIIICVSGLL LFAVLIGNVQ KYLQSSTTRV DEMEEKRRDT EKWMSYRVIP EYLKERIRRF EDYKWRETKG TEEEALLRSL PKDLRLETKR 401: YLYLDMLKRV PWLNIMDDGW LLEAVCDRVK SVFYLANSFI VREGHPVEEM LIVTRGKLKS TTGSHEMGVR NNCCDLQDGD ICGELLFNGS RLPTSTRTVM 501: TLTEVEGFIL LPDDIKFIAS HLNVFQRQKL QRTFRLYSQQ WRSWAAFFIQ AAWRKHCKRK LSKTRDNENI PQGTQLNLAS TLYVSRFVSK ALQNRRKDTA 601: DCSSSPDMSP PVPHKPADLE FAKAEA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)