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AT3G04210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.980
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS class)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G38340.1); Has 7287 Blast hits to 7131 proteins in 234 species: Archae - 2; Bacteria - 61; Metazoa - 8; Fungi - 0; Plants - 7211; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
EMBL:AY143973EMBL:CP002686EnsemblPlants:AT3G04210EnsemblPlants:AT3G04210.1
entrez:819576Gene3D:3.40.50.10140Gene3D:3.40.50.300GeneID:819576
GO:GO:0007165GO:GO:0016021GO:GO:0043531Gramene:AT3G04210.1
hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20HOGENOM:HOG000064702InterPro:IPR000157
InterPro:IPR002182InterPro:IPR027417KEGG:ath:AT3G04210OMA:SHIMKEF
Pfam:PF00931Pfam:PF01582Pfscan:PS50104PhylomeDB:Q8H1N6
PROSITE:PS50104Proteomes:UP000006548RefSeq:NP_566223.1SMART:SM00255
SMR:Q8H1N6STRING:3702.AT3G04210.1SUPFAM:SSF52200SUPFAM:SSF52540
TAIR:AT3G04210TMHMM:TMhelixUniGene:At.18791UniProt:Q8H1N6
Coordinates (TAIR10) chr3:-:1106243..1108005
Molecular Weight (calculated) 60150.50 Da
IEP (calculated) 9.74
GRAVY (calculated) -0.31
Length 531 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSYFFLGTV VVVALAIYTL LGTISFMVYR KFRLHQEKNN ISSCFSFSSC FSFSSSSSTS SPGRKHQVFP SFHGADVRKS FLSHIMKEFK SKGIDIFIDK
101: DIKRGKSIGP ELTEAIRGSR VAIVFLSRKY ASSSWCLNEL ALIMKCRKEL GLTVMTLFYD LDPTDVRKQT GDFGMAFKET CKGKTKDEIG RWRHALEEVA
201: KIAGYHSSIW DNEADMIGIV TTDISNTLNI STPSSDFSDL VGMEDHMKKL ERMLYLDLND VRMIGIWGPP GIGKTSIARV LFRKHSDSFD LSVFMETVKG
301: YTRPGCSDEH GLKLHLQQQF LSQIFNQKDV EVPHLGVVQD RLRDKRVLVV LDDVDQSAQL EAMAKENKWF GPGSRIIITT QDRRLLKAHG IKDVYKVDLP
401: PPDDAFQIFC MYAFGKTSPK HGFEELAWEA TYLSGIHPSG IKSMGSYFRK MSKPEWVNAL QRLRTSKLDS ESPRTHRKLI NRLRNVKQKM LSNTLSRIRK
501: HQIASAAAKA ASVYETSIKE EVDSSAESLN H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)