AT2G39280.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT3G55020.1). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:16402001..16406650 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87205.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.77 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||
| Length | 772 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIADAVSKSD HKRYRLSSFS IATLLISLLL REVNEVGFMN RDAYGFSVRP QHVQRYREYV NIYKEEEVER SARWSNFLEF HAESGVSPTN GSSENTHVNP 101: SESDKKKEKE LNKGAERKDL NADKPGSDLT PGNAREEDEV PNREKNVHKV QLWAEIRPSL QAIEDLMSVR VKMKGDSTNG EQEAQKLNSL ASTDETESSK 201: GVCENDSEDE FYDAERSDPI QDGSSDGTSV SSMSAAADAA SLVSACPWKD ELEVLIHGGA PMALRGELWQ AFAGVKKRRV KNYYQNLLAA DSLGNDIEQE 301: LMQHTDEKGS STDPLSVVEK WKGQIEKDLP RTFPGHPALD DDFRNALRRL LTAYARHNPS VGYCQAMNFF AALLLLLMPE ENAFWSLTGI IDDYFHDYYS 401: EEMLESQVDQ RVLEELLRER FPKLVHHLDY LGVQVACVTG PWFLTIFINM LPWESVLRVW DVLLFEGNRV MLFRTALALM EFYGPALVTT KDIGDAVTLL 501: QSMTGSTFDS SQLVFTACMG YQNVHESKLQ ELRSKHRPAV IAAFEERLKG LQAWRDSKDT ATKLHNSKQD PNSVLASKAS LSNGSLSRSE SGSSYADDIF 601: ISLTGDCEID IFQDLQGQGE LHKLLQEKRS ALLRAEELEV ALMEMVKQDN RRQLKAKIEQ LEQGVTELRR LVSDKREQES AMIQVLMRME QEHKVTEDAR 701: RLAEQDAATQ RYAAEVLQEK YEEAVAALAE MEERAVMAES MLEATLQYQS GQVKAQPSPR QLKQDLPVMV SP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)