AT2G27110.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.982 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAR1-related sequence 3 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAR1-related sequence 3 (FRS3); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), MULE transposase, conserved domain (InterPro:IPR018289); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 5 (TAIR:AT4G38180.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11576969..11580259 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80075.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.64 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||
| Length | 706 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MCWHFANSEK SSYQEGVNVP SGMMYVSMDA NSRGARNASM ATNTKRTIGR DAHNLLEYFK RMQAENPGFF YAVQLDEDNQ MSNVFWADSR SRVAYTHFGD 101: TVTLDTRYRC NQFRVPFAPF TGVNHHGQAI LFGCALILDE SDTSFIWLFK TFLTAMRDQP PVSLVTDQDR AIQIAAGQVF PGARHCINKW DVLREGQEKL 201: AHVCLAYPSF QVELYNCINF TETIEEFESS WSSVIDKYDL GRHEWLNSLY NARAQWVPVY FRDSFFAAVF PSQGYSGSFF DGYVNQQTTL PMFFRLYERA 301: MESWFEMEIE ADLDTVNTPP VLKTPSPMEN QAANLFTRKI FGKFQEELVE TFAHTANRIE DDGTTSTFRV ANFENDNKAY IVTFCYPEMR ANCSCQMFEH 401: SGILCRHVLT VFTVTNILTL PPHYILRRWT RNAKSMVELD EHVSENGHDS SIHRYNHLCR EAIKYAEEGA ITAEAYNIAL GQLREGGKKV SVVRKRIGRA 501: APPSSHGGGI GSGDKTSLSA ADTTPLLWPR QDEMIRRFNL NDGGARAQSV SDLNLPRMAP VSLHRDDTAP ENMVALPCLK SLTWGMESKN TMPGGRVAVI 601: NLKLHDYRKF PSADMDVKFQ LSSVTLEPML RSMAYISEQL SSPANRVAVI NLKLQDTETT TGESEVKFQV SRDTLGAMLR SMAYIREQLS IVGELQTESQ 701: AKKQRK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)