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AT2G20780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.919
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: polyol/monosaccharide transporter 5 (TAIR:AT3G18830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:1960eggNOG:ENOG410XNQKeggNOG:KOG0254EMBL:AC006234EMBL:AK227042EMBL:CP002685EnsemblPlants:AT2G20780
EnsemblPlants:AT2G20780.1entrez:816607GeneID:816607Genevisible:Q0WUU6GO:GO:0008643GO:GO:0015293GO:GO:0016021
GO:GO:0022891Gramene:AT2G20780.1hmmpanther:PTHR23500hmmpanther:PTHR23500:SF13HOGENOM:HOG000202868InParanoid:Q0WUU6InterPro:IPR003663
InterPro:IPR005828InterPro:IPR005829InterPro:IPR020846KEGG:ath:AT2G20780MINT:MINT-8059685ncoils:CoilOMA:VHISWRI
PaxDb:Q0WUU6Pfam:PF00083Pfam:Q0WUU6Pfscan:PS50850PhylomeDB:Q0WUU6PIR:C84593PRIDE:Q0WUU6
PRINTS:PR00171PRO:PR:Q0WUU6PROSITE:PS00216PROSITE:PS00217PROSITE:PS50850ProteinModelPortal:Q0WUU6Proteomes:UP000006548
RefSeq:NP_179671.2scanprosite:PS00216scanprosite:PS00217SMR:Q0WUU6STRING:3702.AT2G20780.1SUPFAM:SSF103473TAIR:AT2G20780
TIGRfam:TIGR00879TIGRFAMs:TIGR00879TMHMM:TMhelixUniGene:At.27138UniGene:At.71164UniProt:Q0WUU6
Coordinates (TAIR10) chr2:-:8947496..8949170
Molecular Weight (calculated) 56804.80 Da
IEP (calculated) 5.59
GRAVY (calculated) 0.49
Length 526 amino acids
Sequence (TAIR10)
(BLAST)
001: MMKNLPEVGN GGGSGFPAVS VGNKKNKYQR MDSDAEESQN HREAEARNSR TRKYVMACAF FASLNNVLLG YDVGVMSGAV LFIQQDLKIT EVQTEVLIGS
101: LSIISLFGSL AGGRTSDSIG RKWTMALAAL VFQTGAAVMA VAPSFEVLMI GRTLAGIGIG LGVMIAPVYI AEISPTVARG FFTSFPEIFI NLGILLGYVS
201: NYAFSGLSVH ISWRIMLAVG ILPSVFIGFA LCVIPESPRW LVMKGRVDSA REVLMKTNER DDEAEERLAE IQLAAAHTEG SEDRPVWREL LSPSPVVRKM
301: LIVGFGIQCF QQITGIDATV YYSPEILKEA GIQDETKLLA ATVAVGVTKT VFILFATFLI DSVGRKPLLY VSTIGMTLCL FCLSFTLTFL GQGTLGITLA
401: LLFVCGNVAF FSIGMGPVCW VLTSEIFPLR LRAQASALGA VGNRVCSGLV AMSFLSVSRA ITVGGTFFVF SLVSALSVIF VYVLVPETSG KSLEQIELMF
501: QGGLERKDGE VELGDAERLV RKEQEF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)