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AT2G02500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
FP Images

Arabidopsis cell culture (plastidal marker)

At2g02500-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-diphospho-sugar transferases superfamily protein
Curator
Summary (TAIR10)
Encodes a protein with 4-Diphosphocytidyl-2C-methyl-D-erythritol synthase activity. The enzyme has an absolute requirement for divalent cations (Mg2+ reaches the highest catalytic activity).
Computational
Description (TAIR10)
ISPD; FUNCTIONS IN: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity; INVOLVED IN: response to light stimulus, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast, chloroplast stroma, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase (InterPro:IPR001228), 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site (InterPro:IPR018294); Has 6821 Blast hits to 6815 proteins in 2244 species: Archae - 30; Bacteria - 4964; Metazoa - 52; Fungi - 6; Plants - 61; Viruses - 0; Other Eukaryotes - 1708 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G02500-MONOMERBioCyc:MetaCyc:AT2G02500-MONOMERBRENDA:2.7.7.60ChEMBL:CHEMBL2285353EC:2.7.7.60eggNOG:COG1211eggNOG:ENOG410IIH2
EMBL:AB037876EMBL:AC004136EMBL:AF230737EMBL:AK118110EMBL:BT006120EMBL:CP002685EnsemblPlants:AT2G02500
EnsemblPlants:AT2G02500.1entrez:814779EvolutionaryTrace:P69834Gene3D:3.90.550.10GeneID:814779Genevisible:P69834GO:GO:0009507
GO:GO:0009570GO:GO:0019288GO:GO:0050518Gramene:AT2G02500.1gramene_pathway:2.7.7.60gramene_pathway:NONMEVIPP-PWYgramene_plant_reactome:1119464
gramene_plant_reactome:6876717HAMAP:MF_00108hmmpanther:PTHR32125hmmpanther:PTHR32125:SF4HOGENOM:HOG000218563InParanoid:P69834InterPro:IPR001228
InterPro:IPR018294InterPro:IPR029044KEGG:00900+2.7.7.60KEGG:ath:AT2G02500KO:K00991OMA:QAYTPQMPaxDb:P69834
PDB:1W77PDB:2YC3PDB:2YC5PDB:2YCMPDB:4NAIPDB:4NAKPDB:4NAL
PDB:4NANPDBsum:1W77PDBsum:2YC3PDBsum:2YC5PDBsum:2YCMPDBsum:4NAIPDBsum:4NAK
PDBsum:4NALPDBsum:4NANPfam:P69834Pfam:PF01128PhylomeDB:P69834PIR:T00613PRIDE:P69834
PRO:PR:P69834PROSITE:PS01295ProteinModelPortal:P69834Proteomes:UP000006548RefSeq:NP_565286.1scanprosite:PS01295SMR:P69834
STRING:3702.AT2G02500.1SUPFAM:SSF53448TAIR:AT2G02500tair10-symbols:ATMEPCTtair10-symbols:ISPDtair10-symbols:MCTTIGRfam:TIGR00453
TIGRFAMs:TIGR00453UniGene:At.10212UniPathway:UPA00056UniProt:P69834
Coordinates (TAIR10) chr2:-:671054..673124
Molecular Weight (calculated) 33939.10 Da
IEP (calculated) 5.96
GRAVY (calculated) -0.10
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMLQTNLGF ITSPTFLCPK LKVKLNSYLW FSYRSQVQKL DFSKRVNRSY KRDALLLSIK CSSSTGFDNS NVVVKEKSVS VILLAGGQGK RMKMSMPKQY
101: IPLLGQPIAL YSFFTFSRMP EVKEIVVVCD PFFRDIFEEY EESIDVDLRF AIPGKERQDS VYSGLQEIDV NSELVCIHDS ARPLVNTEDV EKVLKDGSAV
201: GAAVLGVPAK ATIKEVNSDS LVVKTLDRKT LWEMQTPQVI KPELLKKGFE LVKSEGLEVT DDVSIVEYLK HPVYVSQGSY TNIKVTTPDD LLLAERILSE
301: DS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)