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AT1G69530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21109274 (2011): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin A1
Curator
Summary (TAIR10)
Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational
Description (TAIR10)
expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2218 Blast hits to 2214 proteins in 171 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 48; Plants - 2114; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
BioGrid:28509eggNOG:ENOG410IG2HeggNOG:ENOG410YCRVEMBL:AC073178EMBL:AF360291EMBL:AY051047EMBL:CP002684
EMBL:U30476EnsemblPlants:AT1G69530EnsemblPlants:AT1G69530.1EnsemblPlants:AT1G69530.2entrez:843288ExpressionAtlas:Q9C554Gene3D:2.40.40.10
Gene3D:2.60.40.760GeneID:843288Genevisible:Q9C554GO:GO:0005576GO:GO:0005618GO:GO:0009664GO:GO:0016020
hmmpanther:PTHR31867HOGENOM:HOG000220793InParanoid:Q9C554IntAct:Q9C554InterPro:IPR002963InterPro:IPR007112InterPro:IPR007117
InterPro:IPR007118InterPro:IPR009009PaxDb:Q9C554Pfam:PF01357Pfam:PF03330Pfam:Q9C554Pfscan:PS50842
Pfscan:PS50843PhylomeDB:Q9C554PIR:T50654PRIDE:Q9C554PRINTS:PR01225PRINTS:PR01226PRO:PR:Q9C554
PROSITE:PS50842PROSITE:PS50843ProteinModelPortal:Q9C554Proteomes:UP000006548RefSeq:NP_177112.1RefSeq:NP_849868.1SMART:SM00837
SMR:Q9C554STRING:3702.AT1G69530.3SUPFAM:SSF49590SUPFAM:SSF50685TAIR:AT1G69530tair10-symbols:AT-EXP1tair10-symbols:ATEXP1
tair10-symbols:ATEXPA1tair10-symbols:ATHEXP ALPHA 1.2tair10-symbols:EXP1tair10-symbols:EXPA1UniGene:At.23180UniProt:Q9C554
Coordinates (TAIR10) chr1:+:26142034..26143051
Molecular Weight (calculated) 26519.20 Da
IEP (calculated) 9.10
GRAVY (calculated) -0.09
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MALVTFLFIA TLGAMTSHVN GYAGGGWVNA HATFYGGGDA SGTMGGACGY GNLYSQGYGT NTAALSTALF NNGLSCGACF EIRCQNDGKW CLPGSIVVTA
101: TNFCPPNNAL PNNAGGWCNP PQQHFDLSQP VFQRIAQYRA GIVPVAYRRV PCVRRGGIRF TINGHSYFNL VLITNVGGAG DVHSAMVKGS RTGWQAMSRN
201: WGQNWQSNSY LNGQSLSFKV TTSDGQTIVS NNVANAGWSF GQTFTGAQLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)