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AT1G64380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 4 (TAIR:AT1G78080.1); Has 5953 Blast hits to 5757 proteins in 257 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 5926; Viruses - 6; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW77eggNOG:ENOG410YMKNEMBL:BT033082EnsemblPlants:AT1G64380EnsemblPlants:AT1G64380.1entrez:842745ExpressionAtlas:B3LF94
Gene3D:3.30.730.10GeneID:842745GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009873
GO:GO:0010200Gramene:AT1G64380.1hmmpanther:PTHR31657hmmpanther:PTHR31657:SF9InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT1G64380
OMA:DLLQKFCPaxDb:B3LF94Pfam:PF00847Pfam:Q9C7W2Pfscan:PS51032PhylomeDB:B3LF94PhylomeDB:Q9C7W2
PRIDE:B3LF94PRINTS:PR00367PROSITE:PS51032ProteinModelPortal:B3LF94RefSeq:NP_176620.1SMART:SM00380SMR:B3LF94
STRING:3702.AT1G64380.1SUPFAM:SSF54171TAIR:AT1G64380UniGene:At.36008UniGene:At.67835UniProt:B3LF94UniProt:Q9C7W2
Coordinates (TAIR10) chr1:-:23890981..23891988
Molecular Weight (calculated) 36566.20 Da
IEP (calculated) 8.07
GRAVY (calculated) -0.33
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MEESNDIFQN NFSPKISEIR ASLSQIILAG GPNTLDSIFS LLTPSSVESA TTSFNTHNPP PPPQLGSSVY LRQRDIIEKF HLQNRAISTP HPPLFSSTYD
101: HHQTSELMLQ AAAGSPAAAF AAALAAGRVT KKKKLYRGVR QRHWGKWVAE IRLPQNRMRV WLGTYDTAEA AAYAYDRAAY KLRGEYARLN FPNLKDPSEL
201: LGLGDSSKLI ALKNAVDGKI QSICQRVRKE RAKKSVKVSK NSSATADSSC LSSPEILSSS PVTTTTTAVT SEDSYWVSPM GLCNSENSSP VSVSVPSEVP
301: ATAEEEAMMG VDTDGFLLAR MPSFDPELIW EVLAN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)