AT1G63770.3
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Peptidase M1 family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Peptidase M1 family protein; FUNCTIONS IN: metallopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: apoplast, chloroplast, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782), Peptidase M1, membrane alanine aminopeptidase (InterPro:IPR001930), Peptidase M1, alanyl aminopeptidase (InterPro:IPR012779); BEST Arabidopsis thaliana protein match is: aminopeptidase M1 (TAIR:AT4G33090.1); Has 7901 Blast hits to 7867 proteins in 1782 species: Archae - 112; Bacteria - 3789; Metazoa - 1713; Fungi - 432; Plants - 227; Viruses - 0; Other Eukaryotes - 1628 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:23657791..23664243 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110820.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||
| Length | 987 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARLIIPCRS SSLARVNLLG LLSRAPVPVR SSCLRSSANR LTQHRPFLTS EAICLRKNRF LPHSVDTHKQ NSRRLICSVA TESVPDKAED SKMDAPKEIF 101: LKNYTKPDYY FETVDLSFSL GEEKTIVSSK IKVSPRVKGS SAALVLDGHD LKLLSVKVEG KLLKEGDYQL DSRHLTLPSL PAEESFVLEI DTEIYPHKNT 201: SLEGLYKSSG NFCTQCEAEG FRKITFYQDR PDIMAKYTCR VEGDKTLYPV LLSNGNLISQ GDIEGGRHYA LWEDPFKKPC YLFALVAGQL VSRDDTFTTR 301: SGRQVSLKIW TPAEDLPKTA HAMYSLKAAM KWDEDVFGLE YDLDLFNIVA VPDFNMGAME NKSLNIFNSK LVLASPETAT DADYAAILGV IGHEYFHNWT 401: GNRVTCRDWF QLSLKEGLTV FRDQEFSSDM GSRTVKRIAD VSKLRIYQFP QDAGPMAHPV RPHSYIKMDN FYTVTVYEKV WLFTNSVLLY AGAEVVRMYK 501: TLLGTQGFRK GIDLYFERHD EQAVTCEDFF AAMRDANNAD FANFLQWYSQ AGTPVVKVVS SYNADARTFS LKFSQEIPPT PGQPTKEPTF IPVVVGLLDS 601: SGKDITLSSV HHDGTVQTIS GSSTILRVTK KEEEFVFSDI PERPVPSLFR GFSAPVRVET DLSNDDLFFL LAHDSDEFNR WEAGQVLARK LMLNLVSDFQ 701: QNKPLALNPK FVQGLGSVLS DSSLDKEFIA KAITLPGEGE IMDMMAVADP DAVHAVRKFV RKQLASELKE ELLKIVENNR STEAYVFDHS NMARRALKNT 801: ALAYLASLED PAYMELALNE YKMATNLTDQ FAALAALSQN PGKTRDDILA DFYNKWQDDY LVVNKWFLLQ STSDIPGNVE NVKKLLDHPA FDLRNPNKVY 901: SLIGGFCGSP VNFHAKDGSG YKFLGDIVVQ LDKLNPQVAS RMVSAFSRWK RYDETRQGLA KAQLEMIMSA NGLSENVFEI ASKSLAA |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)