AT1G59520.3
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.996 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : CW7 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes CW7. | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
CW7; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2045 (InterPro:IPR019141); Has 145 Blast hits to 144 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:21861589..21866016 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 42965.90 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.01 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||
| Length | 388 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLNDGEVTPS RHEILSMVKK HSKSLGKTSL DEQDASDVEM DSNFWHGVFD VYFVRCMESR RRQDDDLLFF VRKLSCKSYG LTENEDAPAP YFVRRWAPKL 101: DELLGESLAE VDWRKSFYLN MIAHTSFTVT VAICSNEALK TYQGSKDTKL SPIYKVVKTV YASPSRVNFH LDSKKAMETT PAYPEICFAV DDFDSTFDAV 201: VLTDKDHCYC VLLNSHDGAA FPSATVKDSS DSNTNADPRT VKDPKVTLFS GFVSYQMVRE AYEGGRNRFG SLLSLGHITG KADRLYMRGP GGRGEVEVAV 301: SGVVDQSQVV LGPVSPMSSK KSIDLGSIFR KAASVASVAA KHAIAAATAS YDEDEMFPLK CCLMSISLPW DTIAHDLLFK ATPPVNME |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)