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AT2G30710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT1G04830.2); Has 4509 Blast hits to 4436 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 2389; Fungi - 783; Plants - 598; Viruses - 0; Other Eukaryotes - 739 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ68eggNOG:KOG1092EMBL:AC002340EMBL:AF370511
EMBL:AY128815EMBL:CP002685EnsemblPlants:AT2G30710EnsemblPlants:AT2G30710.1
entrez:817622GeneID:817622Gramene:AT2G30710.1hmmpanther:PTHR22957
hmmpanther:PTHR22957:SF26HOGENOM:HOG000162526InterPro:IPR000195KEGG:ath:AT2G30710
OMA:IREIPFNPfam:PF00566Pfscan:PS50086PhylomeDB:O49336
PIR:G84711PROSITE:PS50086Proteomes:UP000006548RefSeq:NP_565706.1
SMART:SM00164SMR:O49336STRING:3702.AT2G30710.1SUPFAM:SSF47923
TAIR:AT2G30710UniGene:At.12261UniProt:O49336
Coordinates (TAIR10) chr2:-:13086147..13088991
Molecular Weight (calculated) 51509.10 Da
IEP (calculated) 5.51
GRAVY (calculated) -0.53
Length 440 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKREDEQQK RDDSRFNQTL KNVQGFLKGR SIPGKVLLTR RSDPPPYPIS PTYQRSLSEN DAGRNELFES PVEVEDHNSS KKHDNTYAGK LRSNSSAERS
101: VKEVQNLKIG VRSSDSARVM KFNKVLSETT VILEKLRELA WNGVPHYMRP DVWRLLLGYA PPNSDRREAV LRRKRLEYLE SVGQFYDLPD SERSDDEINM
201: LRQIAVDCPR TVPDVSFFQQ EQVQKSLERI LYTWAIRHPA SGYVQGINDL VTPFLVIFLS EYLDGGVDSW SMDDLSAEKV SDVEADCYWC LTKLLDGMQD
301: HYTFAQPGIQ RLVFKLKELV RRIDEPVSRH MEEHGLEFLQ FAFRWYNCLL IREIPFNLIN RLWDTYLAEG DALPDFLVYI YASFLLTWSD ELKKLDFQEM
401: VMFLQHLPTH NWSDQELEMV LSRAYMWHSM FNNSPNHLAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)