AT1G44900.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : minichromosome maintenance (MCM2/3/5) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes MCM2 (MINICHROMOSOME MAINTENANCE 2), a protein essential to embryo development. Overexpression results in altered root meristem function. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
MINICHROMOSOME MAINTENANCE 2 (MCM2); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 2 (InterPro:IPR008045), MCM protein 2, N-terminal (InterPro:IPR021092); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:16970291..16974457 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 105387.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.78 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 934 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGENSDNEP SSPASPSSAG FNTDQLPIST SQNSENFSDE EEAAVDTQVI RDEPDEAEDE EEEEGEDLFN DTFMNDYRKM DENDQYESNG IDDSVDDERD 101: LGQAMLDRRA ADADLDAREN RLANRKLPHL LHDNDDWNYR PSKRSRTTVP PRGNGGDPDG NPPSSPGVSQ PDISMTDQTD DYQDEDDNDD EAEFEMYRIQ 201: GTLREWVMRD EVRRFIAKKF KDFLLTYVKP KNENGDIEYV RLINEMVSAN KCSLEIDYKE FIHVHPNIAI WLADAPQPVL EVMEEVSEKV IFDLHPNYKN 301: IHTKIYVRVT NLPVNDQIRN IRQIHLNTMI RIGGVVTRRS GVFPQLQQVK YDCNKCGAVL GPFFQNSYSE VKVGSCSECQ SKGPFTVNVE QTIYRNYQKL 401: TIQESPGTVP AGRLPRHKEV ILLNDLIDCA RPGEEIEVTG IYTNNFDLSL NTKNGFPVFA TVVEANYVTK KQDLFSAYKL TQEDKTQIEE LSKDPRIVER 501: IIKSIAPSIY GHEDIKTALA LAMFGGQEKN IKGKHRLRGD INVLLLGDPG TAKSQFLKYV EKTGQRAVYT TGKGASAVGL TAAVHKDPVT REWTLEGGAL 601: VLADRGICLI DEFDKMNDQD RVSIHEAMEQ QSISISKAGI VTSLQARCSV IAAANPVGGR YDSSKSFAQN VELTDPILSR FDILCVVKDV VDPVTDEMLA 701: EFVVNSHFKS QPKGGKMEDS DPEDGIQGSS GSTDPEVLPQ NLLKKYLTYS KLYVFPKLGE LDAKKLETVY ANLRRESMNG QGVSIATRHL ESMIRMSEAH 801: ARMHLRQYVT EEDVNMAIRV LLDSFISTQK FGVQRTLRES FKRYITYKKD FNSLLLVLLK ELVKNALKFE EIISGSNSGL PTIEVKIEEL QTKAKEYDIA 901: DLRPFFSSTD FSKAHFELDH GRGMIKCPKR LITW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)