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AT1G27150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.985
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G27110.1); Has 429 Blast hits to 423 proteins in 137 species: Archae - 5; Bacteria - 191; Metazoa - 78; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR50eggNOG:KOG2610EMBL:AC000348EMBL:CP002684EnsemblPlants:AT1G27150EnsemblPlants:AT1G27150.1entrez:839604
Gene3D:1.25.40.10GeneID:839604Gramene:AT1G27150.1hmmpanther:PTHR16263hmmpanther:PTHR16263:SF4InterPro:IPR011990KEGG:ath:AT1G27150
OMA:EPWAHHAPhylomeDB:Q9LFX3Proteomes:UP000006548RefSeq:NP_564271.1SUPFAM:SSF48452TAIR:AT1G27150UniGene:At.20606
UniProt:Q9LFX3
Coordinates (TAIR10) chr1:+:9429177..9432068
Molecular Weight (calculated) 53592.00 Da
IEP (calculated) 5.66
GRAVY (calculated) -0.33
Length 468 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKTVRCVRW GYEVNTSSDA CIDAINSYFQ QVLSYGRKRK VILEAPLYDK DCVLGSILAA HFLSSSDPSR ANSYVEAAAS NLEQSTPYEK AVYEAVTYLI
101: SEDRDDDLAF EMHTKLLKRF PKDLASLKRA QLLSFYMGQP DPFLGLVQQV LPANQEESYI HGLLAFPLLE LGRMEEAAAA SRKGYEINKE DAWAHHCLCH
201: VLQHECRFKE AVEFMEALAG TWPSCSSFMY THNWWHVALC YLEGGSPMSK VEEIYDHHIW KELEKDDAVP PEVYLNALGL LIRLDVRDAL DGFEDRLKNL
301: AVRLTNQANW YLEWHLDILI VWALAKVGET SRAHELLEGL KFRLSKKNKK KQQVMQKGIQ LGEAVYEYAR GNYEKALELL GSEFNAIGYK IVGASDEQID
401: VFNEMWCQLL LKTGQSSTAK EVIRERIKAR DGIPFMWRLL EKSYSMEGNA EAESSARERA KKLESCYF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)