AT1G18660.4
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.641 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc finger (C3HC4-type RING finger) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6421433..6425489 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55928.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.20 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 491 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNEDSLPPF TLFGLDDVEN YGLVTEADNS LPLDIHNQVF QLVEKGNQSF KESRFEEAIS SYSKANSIKP LDPIVLGNRS AAYIRFGQYL KQRSASISEY 101: KPLNGFDMSM LGELALKDAD KLMSLQSSLV KSYITKACAL MLLERYEVAR DTILSGLQID PFSGPLRSNL QELEKVMPNS MRKTHGMAER SDDFDCTVCL 201: KLLYEPATTP CGHTFCRSCL FQSMDRGNKC PLCRTVIFMT PRTCAVSVTL NNIIEKNFPE EYAERKSEQD TLVHLGNESM PLFVMDVIIP CQKLSLHIFE 301: PRYRLMVRRI MEGNHRMGMV ALDSATGSPV DVACEVEITE CDPLPDGRFV LELESHRRCR IVKAWDQDGY RVAEVEWVKD IPPQSEQGKA DLRELTTSAA 401: SFARSWLDRA KEAARQGDRR RLEILLNVES MIPTPQDPER FSFWLATLTD RRPSERLELL RLQDTGEVLD YRLVQIARQI SLFHQSLSFD C |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)