AT1G15280.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : CASC3/Barentsz eIF4AIII binding | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CASC3/Barentsz eIF4AIII binding; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: CASC3/Barentsz eIF4AIII binding (TAIR:AT1G80000.2); Has 4051 Blast hits to 2285 proteins in 311 species: Archae - 2; Bacteria - 232; Metazoa - 1228; Fungi - 302; Plants - 228; Viruses - 67; Other Eukaryotes - 1992 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:5252538..5256214 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63439.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.53 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.12 | ||||||||||||||||||||||||||||||||
| Length | 585 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATSEAEYES DPEELNRSLA TRRREASDDD SDDDDAVRDV KNQRAVVDSD LSDEEVGTVK YDNDEDGEDS YEDDEEESGG GIDNDKSGVV KEAGDMNGEE 101: ENEKEKLQAA VPTGGAFYMH DDRFQEMSAG GNRRMRGGRR QWGSGEERKW GHDKFEEMNT GEKHSDQRMS RGRFRGHGRG RGQGRGYARG SSSNTLTSSG 201: QQIYVPKAVS RGRGPRKSDT PLRNENQAHS EQSKQLRNSN GSQNSREKMP HLDSRRSPTA PAKTENQGAH AKKNVAVSSL SSASPPFYPS APSSNVVHGI 301: QVSMERLHTN ESVTPSGKKY RNTKSGYSPV WTAKTLQSTS QGRGAPAAGN TFYPQSHSQG DRFSSPMQLN GDSKGTGQRP SGQGFDQHSA VVRSLSSSPQ 401: KTSLSRNRYP PDEIESSSET AALIAKGKGT LRPGGSSSFM YSGSQMMGRP ESLTSADNSN FPTFLPVMQF GGQHGGVPTF GMAYPGYVQS EDGVRNPEMT 501: WMPVLAGPGA LGASYSPPPY AAHQAHNPGL PSSAGFSSKD SSTNTLNDLV KPMESPEVAE NGVSERQSNN PSKQPRRYSE MTFSK |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)