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AT5G57560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22430844 (2012): Golgi
  • PMID:18998720 (2009): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Xyloglucan endotransglucosylase/hydrolase family protein
Curator
Summary (TAIR10)
Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli
Computational
Description (TAIR10)
Touch 4 (TCH4); CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglycosylase 6 (TAIR:AT4G25810.1); Has 2219 Blast hits to 2201 proteins in 305 species: Archae - 0; Bacteria - 284; Metazoa - 0; Fungi - 458; Plants - 1386; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G57560-MONOMERBioGrid:21104CAZy:GH16EC:2.4.1.207
eggNOG:COG2273eggNOG:ENOG410II9PEMBL:AB011482EMBL:AF051338
EMBL:AF083792EMBL:AF367262EMBL:AF446881EMBL:AY052712
EMBL:AY055102EMBL:CP002688EMBL:U27609EnsemblPlants:AT5G57560
EnsemblPlants:AT5G57560.1entrez:835860Gene3D:2.60.120.200GeneID:835860
Genevisible:Q38857GO:GO:0004553GO:GO:0005618GO:GO:0005794
GO:GO:0009408GO:GO:0009409GO:GO:0009612GO:GO:0009664
GO:GO:0009733GO:GO:0009741GO:GO:0010411GO:GO:0016762
GO:GO:0042546GO:GO:0048046Gramene:AT5G57560.1hmmpanther:PTHR31062
hmmpanther:PTHR31062:SF20HOGENOM:HOG000236368InParanoid:Q38857InterPro:IPR000757
InterPro:IPR008263InterPro:IPR010713InterPro:IPR013320InterPro:IPR016455
KEGG:ath:AT5G57560KO:K14504OMA:QIKNNGEPaxDb:Q38857
Pfam:PF00722Pfam:PF06955Pfam:Q38857Pfscan:PS51762
PhylomeDB:Q38857PIR:T52097PIRSF:PIRSF005604PRIDE:Q38857
PRO:PR:Q38857PROSITE:PS01034PROSITE:PS51762ProteinModelPortal:Q38857
Proteomes:UP000006548RefSeq:NP_200564.1scanprosite:PS01034SMR:Q38857
STRING:3702.AT5G57560.1SUPFAM:SSF49899TAIR:AT5G57560tair10-symbols:TCH4
tair10-symbols:XTH22UniGene:At.24429UniProt:Q38857
Coordinates (TAIR10) chr5:-:23307296..23308235
Molecular Weight (calculated) 32094.90 Da
IEP (calculated) 8.81
GRAVY (calculated) -0.49
Length 284 amino acids
Sequence (TAIR10)
(BLAST)
001: MAITYLLPLF LSLIITSSVS ANFQRDVEIT WGDGRGQIKN NGELLTLSLD KSSGSGFQSK NEYLFGKVSM QMKLVPGNSA GTVTTLYLKS PGTTWDEIDF
101: EFLGNSSGEP YTLHTNVYTQ GKGDKEQQFK LWFDPTANFH TYTILWNPQR IIFTVDGTPI REFKNMESLG TLFPKNKPMR MYSSLWNADD WATRGGLVKT
201: DWSKAPFTAS YRGFQQEACV WSNGKSSCPN ASKQGTTTGS WLSQELDSTA QQRMRWVQRN YMIYNYCTDA KRFPQGLPKE CLAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)