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AT5G56520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.875
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55365.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J8EUeggNOG:ENOG4111D6EEMBL:AK175213EMBL:AY088328
EMBL:BT024664EMBL:CP002688EnsemblPlants:AT5G56520EnsemblPlants:AT5G56520.1
entrez:835753GeneID:835753Gramene:AT5G56520.1hmmpanther:PTHR35104
hmmpanther:PTHR35104:SF1HOGENOM:HOG000148646KEGG:ath:AT5G56520OMA:LRWIPPS
PhylomeDB:Q8L9N8Proteomes:UP000006548RefSeq:NP_568841.1TAIR:AT5G56520
UniGene:At.29379UniProt:Q8L9N8
Coordinates (TAIR10) chr5:+:22885226..22885531
Molecular Weight (calculated) 11773.90 Da
IEP (calculated) 5.87
GRAVY (calculated) -0.22
Length 101 amino acids
Sequence (TAIR10)
(BLAST)
001: MVFRGDTVVS VAHISAEIFQ RLRWIPPSDR ISSGEMLQLV CCFPLQQLGR FVLWFWNYIC VPPPEILYFD GRRDDDDDGY GSSSSSSNVT HHHNYYHLHL
101: E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)