suba logo
AT5G50900.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.730
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 3124 Blast hits to 1989 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 424; Fungi - 362; Plants - 2044; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRTNeggNOG:KOG0167EMBL:AB017063EMBL:BT020588EMBL:BT033035EMBL:CP002688EnsemblPlants:AT5G50900
EnsemblPlants:AT5G50900.1entrez:835162Gene3D:1.25.10.10GeneID:835162Gramene:AT5G50900.1hmmpanther:PTHR23315hmmpanther:PTHR23315:SF86
InterPro:IPR000225InterPro:IPR011989InterPro:IPR016024KEGG:ath:AT5G50900OMA:RCEGPDLPhylomeDB:Q9FI58Proteomes:UP000006548
RefSeq:NP_199903.1SMART:SM00185SMR:Q9FI58STRING:3702.AT5G50900.1SUPFAM:SSF48371TAIR:AT5G50900UniGene:At.25502
UniProt:Q9FI58
Coordinates (TAIR10) chr5:-:20705051..20706718
Molecular Weight (calculated) 59273.60 Da
IEP (calculated) 7.89
GRAVY (calculated) 0.23
Length 555 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVPNSDDGD RSLTEVITSL IDSIPNLLSF KCKWSSIRAK LADLKTQLSD FSDFAGSSSN KLAVDLLVSV RETLNDAVAV AARCEGPDLA EGKLKTQSEV
101: DSVMARLDRH VKDAEVLIKS GLLIDNGIVV SGFSISSKKE AVRLEARNLV IRLQIGGVES KNSAIDSLIE LLQEDDKNVM ICVAQGVVPV LVRLLDSCSL
201: VMKEKTVAVI SRISMVESSK HVLIAEGLSL LNHLLRVLES GSGFAKEKAC VALQALSLSK ENARAIGCRG GISSLLEICQ GGSPGSQAFA AGVLRNLALF
301: GETKENFVEE NAIFVLISMV SSGTSLAQEN AVGCLANLTS GDEDLMISVV REGGIQCLKS FWDSVSSVKS LEVGVVLLKN LALCPIVREV VISEGFIPRL
401: VPVLSCGVLG VRIAAAEAVS SLGFSSKSRK EMGESGCIVP LIDMLDGKAI EEKEAASKAL STLLVCTSNR KIFKKSDKGV VSLVQLLDPK IKKLDKRYTV
501: SALELLVTSK KCRKQVVAAG ACLHLQKLVD MDTEGAKKLA ENLSRSKIWG VFTRP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)