AT5G47480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.921 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RGPR-related | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RGPR-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RGPR-related (TAIR:AT5G47490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19257420..19263132 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 145887.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.68 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1350 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASTADFLLD DQTDEDFFDK LVDDSYTPTA SSSAKELKFD DGSDSDDAKA FANLSVVDDV LGDGDVALNE AGLGNDVANE GTSGSVGKEE PSSSIAPEAV 0101: QFVNSDANRL RDVDVVRSEV DDMALTETGK ESNIVDGSGS PGVKEVDWGS FYADSSVNDG GGFGSYSDFF TELDATAGNV QGQAEVAVAT GGNLVANDTI 0201: NTSVGLDNSA GFEQHQGQVQ HDSGSGQYVD NSQSWENLYP GWKYDASTGQ WYQVDGQDAT VNSQESYINS TGNWESVAAD NSDVAYLKQS TTSAMAGTAE 0301: SVSTWNQVSQ VGNGYPEHMV FDAQYPGWYY DTIAQEWRSL DSYNQASQTT VTGQAHDQQV QNGHARTTTY HNNSQSSVYD VNNKNQTFKA QDFAIQGQHG 0401: SWDESYYANN QQAGNTWQPV NVGKAEPAVT SDSLSRFGGN QQVNNLYSTE SVAEQFKPNT IGAQSFIPQH MNVASATQNG PLSFSNDLYN RQQSVDHAQK 0501: SFQNNQLFSP SVGRSSDRRP PHALVSFGFG GKLIVMKDNN GSLQNTSFGS QGIGGSSITV LNLAEVISGS ASYSSPGEDS LSYFRCLHQQ SLPGPLVGGN 0601: VGSKELHKWI DERLLHCESS NMDFSRGKLL KMLLSLLRIS CQYYGKLRSP FGSDASQKET DTPEAAVAKL FAFAKKDGIQ NGYAPISQCL QHLPPESQMQ 0701: VTASEVQNLL ASGRKMEALQ CAQEGHLWGP ALVIAAQLGD QFYVDTVKQM ALRQLIPGSP LRTLCLLVAG QPAEVCPTGS SSSMLDNWEE NLGIITANRT 0801: TDDDLVIIHL GDSMWKERGE IIAAHICYLI ADKNFDPYSE SARLCLVGAD HWKCPRTYAS PDAIQRTELY EYSKTLGNSQ YILLPFQPYK IIYAHMLAEV 0901: GKLSTAQKYC QAVIRCLKTS RSSEVEMWKQ FASSLEERIR SHQEGGNLAP AKLVGKLLNS LWGMPPPAPH STTGNPQVNE YQHQQQEAAK LSYSQSANTM 1001: SSLMPPASIE PVHEWGGNGR TMAAHSRSVS EPDFSRTPIQ DQTDSSKDKA PDGVTQVKST RKVPSSRFSR FGIGILKNTV GKVFPSRSSN EAKLGNENQF 1101: YYDDNLKRWV ERGVEPPAEE AALPPPPTSV PFRSNSLGHE NKSEIKNEMS PSSGSWSSGS PTPSENSPGI PPVSQGSNQF SARGRMGVRA RYVDTYNQGS 1201: SSMYQSPPVQ SSKPPIPAKA KFFVPAAPAS FANDQVMESV SAETRQENSG DEAVVGSAGA PGPSQASFQS PTPSPIAMQR FPSVDNIRRS GSGTSLNGDL 1301: PQSVSRRTAS WSGSVNSSSF MSPTSASTFR PSPLNSSSSS LGEELQEVEL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)