AT5G43560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT1G04300.1); Has 12918 Blast hits to 9295 proteins in 852 species: Archae - 42; Bacteria - 1359; Metazoa - 4426; Fungi - 1772; Plants - 1152; Viruses - 72; Other Eukaryotes - 4095 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17501043..17505526 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 117455.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.89 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1055 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSESTNEDSG AGRSSLEENS NGQRSQSEEA IAEWRSSEQV ENGTPSTSPP YWDIDDDDDF GSKPSQLFGK NTWTIEKFSD INKRELRGDV FEVGGYKWYI 0101: LIYPQGCDVC NHLSLFLCVA HHEKLLPGWS HFAQFTIAVS NKDPKKSKHS DTLHRFWKKE HDWGWKKFIE LPKLKEGFID DSGCLTIKAQ VQVIRERVDR 0201: PFRCLHYKYR EELVRVYLGN VEQICWRFVE EKRSKLGRLI EDKAKWKSFC AFWMGLDQNS RRRMSREKMD VILKIVVKHF FVEKEVTSTL VMDSLYSGLK 0301: ALEGQNKNKE SRPRLMDTEE STAPIVSVDK DSFALVDDVL LLLEKAALEP LPKKEEKSSQ NRTKDGNAGE EFSREAVERD DRRLTELGRR TVEIFVLAHI 0401: FSNKIEVAYQ EAIAWKRQEE LIREEEEAWL AESEQKGKRG ASEKEKKSKK KQAKQKKNKN KGKEMRKEDK VRTQTEEREI EKEECVRAIA ESSAEKPDTL 0501: GDVSDVSDSV DSSAEILQLD SEDRESSPVH WEMDASEVHP PSAGDTSRGR GNSFSIPNGV AERKGLSTMD DSSSTCSNDS IQSGVANGSY KGNVLNCQSQ 0601: KWFSNGKIQP GKVSDSNSLA SEKEHQPSRL ASDPKNQSHS SDIRRVGEAD IVISHIQKPE SPKERSPVSK DPNMIQMKEK SAAVLSPSRA APWNPPSPVQ 0701: AKPEKKGVSN VEAVPNRKVI SVKSPSSHHA SPSREAQLQT VGPRADIQKI ASPKPVEQPA PPMSRPLSAP IIPPTQAAPV ISAVQTSTAS LARSMSSTGR 0801: LGSPTHSQAY NPQSYKHAIV GSSGFTHPSS QSSGTSTLPP YSHPSPISVS NQSGFPINVG SWDVSSGGLL WTGGSSSTRD TTTTISGNHK TNTYNAPVVT 0901: TSIRPTNVQI GRTAQSLMTD EFPHLDIIND LLADEHGTMD NSVYRVPQQF NNQYSYHGGA DLGISSRSRS YSDDGFHQSY GEYMPHSASS SPYGNGQTQS 1001: QWQMANMDFS LPAMRNQDDV SASATATYSY FDLDSSNPNL SGINGYRDFR PSNGH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)