AT5G39990.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.999 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G15050.1); Has 967 Blast hits to 966 proteins in 117 species: Archae - 0; Bacteria - 38; Metazoa - 572; Fungi - 0; Plants - 318; Viruses - 14; Other Eukaryotes - 25 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:16004494..16006428 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51121.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.62 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||
| Length | 447 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKLRSYYSN VRHHQNHHHH HHHHSNIVSS ERKWIFFPLL IGSIFALFLL FLTTTLTSPT GGVRFLPFTR PVLLTGSGSS AFVESKIKPQ QISSLPSPPR 101: FAYLISGSAG DGKSLRRTLL ALYHPNNRYV VHLDRESSRE EREELHGYIK NSSLFRRFMN VHMIEKANLV TYRGPTMVAN TLHAAAILLR EGADWDWFIN 201: LSSSDYPLVT QDDLLHIFSH LPRDLNFIDH TSNIGWKASQ RAKPVIIDPG LYLNKKSDVF WVTQRRSIPT AFKLFTGSAW MALSRPFVDY CIWGWDNLPR 301: TVLMYYSNFL SSPEGYFHTV LCNAEEFRNT TVNSDLHFIS WDNPPKQHPH HLTLTDMTKM VNSNAPFARK FRREDPVLDK IDDELLNRGP GMITPGGWCI 401: GSHENGSDPC AVIGDTDVIR PGPGARRLEN LVTSLLSTEN FRSKQCK |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)