AT5G37630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
EMBRYO DEFECTIVE 2656 (EMB2656); FUNCTIONS IN: binding; INVOLVED IN: mitotic chromosome condensation, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 333 Blast hits to 316 proteins in 147 species: Archae - 0; Bacteria - 4; Metazoa - 113; Fungi - 138; Plants - 47; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:14947407..14952546 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 116757.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.80 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1051 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGEESEIAMA SADRNNLTQK IAKILNETRT SYATHNRKLK ELATIRSKLS SSESESESVS SSILQFSSVF LKTLTPLFIA AQRRTAAAER VVRFVAEFAC 0101: LRSNSDGDSD CDEFLEEFLK FLVAGSVAAN RNARFRACQI ISEIILRLPD EVEVADELWD DVIDCMMLRV RDKVPVIRTF AVRSLSRFVN DPENSDILDL 0201: LLEVLPLEQN PEVRKTIVLS LPPSNATTQA IIDCTLDVNE SVRKAAYSVL ANKVPLQSLS IKLRTTILQR GLADRAVNVS TECLKLMKEQ WLANYCEGDP 0301: ITFLKYLDVE TYESVAESAL EVLLSEGLIM PSDDKSIQQY ILSADGETRD ESTCSAPSIQ LMEPEIALYW RIICRKVHQS AQAKGSDAAT AMGAEAAVYA 0401: AEASDANDLL ERILPATVSD YVDLVKAHIE AGPNHHFASR QLLLLGTMLD FSDAMLHKTV SSFVQELLRR PFEQELDEDG NSIVIGDGIN LGGDKDWAEA 0501: VSKLAKKVHA APGEYEEVIL VVVEEVARPC RERTADFLQW MHMLSLTSLL LENGKSLHSL QGKAIEPEEI LHALLLPGAK HTHLDVQRIA IKGLGLFGLL 0601: EKKPSEELVR QLRAAFCRSP PPISIMACKA LVDLGMWHSP TEVDKAMGQD LLSQFEDDSI DFAPIDLSNA EEDMNFKMLD LLYAGLESDD WRASTESSEN 0701: ESVKATVGEG FAKLLLLGEK YPNLPASFYP FVLGKLIALY FSEESKEQLR FKQCLSVFFE HYASLSEKHK GYVSKAFVPL VRSMWPGIDG NTKSSSYVVS 0801: NQRKRAVQVS RFILQMMQTP LYKKETRGEP ESQVNKSPED SIQHPLNCTE EGLAIRIAIE MLSFKEKKTA HEKAYVAALC KILVLLHLKP SEQNVTKLLK 0901: KLLSLLADSV RSEKDLLKEV KPVLQHLKSL DACPSEELTQ DQANSIFEIL GVSYNLEITE TTTVPQTPAP CSTKPARSRR RARIEETSSD EEEVASPPPS 1001: APNTLMTRSH RASKAAALAK IMASKVKMSN VDEDDEEEEG SSDVTADDSD E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)