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AT5G27840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.976
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcineurin-like metallo-phosphoesterase superfamily protein
Curator
Summary (TAIR10)
encodes a serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.
Computational
Description (TAIR10)
TOPP8; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT3G05580.1); Has 7305 Blast hits to 7120 proteins in 684 species: Archae - 78; Bacteria - 668; Metazoa - 2406; Fungi - 1414; Plants - 989; Viruses - 10; Other Eukaryotes - 1740 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G27840EnsemblPlants:AT5G27840.1entrez:832846hmmpanther:PTHR11668
hmmpanther:PTHR11668:SF262Pfam:PF00149Pfam:PF16891scanprosite:PS00125
tair10-symbols:TOPP8
Coordinates (TAIR10) chr5:-:9863311..9864828
Molecular Weight (calculated) 36046.50 Da
IEP (calculated) 5.46
GRAVY (calculated) -0.22
Length 318 amino acids
Sequence (TAIR10)
(BLAST)
001: MMTSMEGMVE KGVLDDIIRR LLEGKGGKQV QLSESEIRQL CFNARQIFLS QPNLLDLHAP IRICGDIHGQ YQDLLRLFEY GGYPPSANYL FLGDYVDRGK
101: QSLETICLLL AYKIRYPSKI YLLRGNHEDA KINRIYGFYD ECKRRFNVRL WKVFTDCFNC LPVAALIDEK ILCMHGGLSP DLDNLNQIRE IQRPIEIPDS
201: GLLCDLLWSD PDQKIEGWAD SDRGISCTFG ADKVAEFLDK NDLDLICRGH QVVEDGYEFF AKRRLVTIFS APNYGGEFDN AGALLSVDES LVCSFEIMKP
301: APASSSHPLK KVPKMGKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)