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AT5G18520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.545
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Lung seven transmembrane receptor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Lung seven transmembrane receptor family protein; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT3G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQAQeggNOG:KOG2569EMBL:CP002688EnsemblPlants:AT5G18520EnsemblPlants:AT5G18520.1entrez:831970GeneID:831970
GO:GO:0002237GO:GO:0010015GO:GO:0016021Gramene:AT5G18520.1hmmpanther:PTHR21229hmmpanther:PTHR21229:SF26InParanoid:F4JY11
InterPro:IPR009637KEGG:ath:AT5G18520OMA:CVLASRYPANTHER:PTHR21229PaxDb:F4JY11Pfam:PF06814PRIDE:F4JY11
Proteomes:UP000006548RefSeq:NP_197353.1STRING:3702.AT5G18520.1TAIR:AT5G18520TMHMM:TMhelixUniGene:At.43373UniProt:F4JY11
Coordinates (TAIR10) chr5:+:6145027..6146349
Molecular Weight (calculated) 50247.40 Da
IEP (calculated) 6.24
GRAVY (calculated) 0.41
Length 440 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKMPLSVVV FLLFSAAFLA VSMAEIKSLV ISDDARPMIL FEKFGFTHTG HVTVSISSVS VVSTSSDPNP EASRLGFFLL SEESLLQVLL EIQQNPRFCV
101: LDSHYVTHLF TFRDLSPPPN SRFNQSYPVT SPNEYSLFFA NCVPETKVSM AVRTEMYNKD PNGSKDYLPA GSTQLPTLYS FFFLCYVAFL GFWSYTCWTN
201: KQTVHRIHLL MAGLLLIKSL NLICAAEDKH YVKITGTPHG WDILFYIFQF IRVVLLFTVI ILIGTGWSFL KPFLQEKEKN VLIIVIPLQV LANIASIVIG
301: ETGPFIKDWV TWNQVFLLVD IICCCAIIFP IVWSIRSLRE TSKTDGKAAR NLSKLTLFRQ FYIVVIGYLY FTRIVVFALK TIAAYKYQWV SFAAEEIVSL
401: VFYVIMFHMF RPEEKNEYFA VDDDEEEAAA LALRDEEFEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)