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AT5G17660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tRNA (guanine-N-7) methyltransferase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tRNA (guanine-N-7) methyltransferase; FUNCTIONS IN: tRNA (guanine-N7-)-methyltransferase activity; INVOLVED IN: tRNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N-7) methyltransferase (InterPro:IPR003358); BEST Arabidopsis thaliana protein match is: tRNA (guanine-N-7) methyltransferase (TAIR:AT5G24840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0220eggNOG:KOG3115EMBL:AY088862EMBL:BT003338
EMBL:BT008711EMBL:CP002688EnsemblPlants:AT5G17660EnsemblPlants:AT5G17660.1
entrez:831632Gene3D:3.40.50.150GeneID:831632GO:GO:0008176
Gramene:AT5G17660.1hmmpanther:PTHR23417hmmpanther:PTHR23417:SF18HOGENOM:HOG000237936
InterPro:IPR003358InterPro:IPR029063KEGG:ath:AT5G17660KO:K03439
OMA:RVTIQFPPfam:PF02390Pfscan:PS51625PhylomeDB:Q8L8R4
PROSITE:PS51625Proteomes:UP000006548RefSeq:NP_568355.1SMR:Q8L8R4
STRING:3702.AT5G17660.1SUPFAM:SSF53335TAIR:AT5G17660TIGRfam:TIGR00091
TIGRFAMs:TIGR00091UniGene:At.43971UniProt:Q8L8R4
Coordinates (TAIR10) chr5:-:5818778..5820811
Molecular Weight (calculated) 35487.50 Da
IEP (calculated) 7.96
GRAVY (calculated) -0.31
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLCQACSS SSATPLLLAK RVFSLASSPF IFMREHKIPR HCNSFRAFNA VSASSSASTS VCVDFKDLRS NELVELEYAE LNLNHKISEE VGHVRIRQHV
101: NPLSSSFSKP APVPVWDEVY KDPSLPLMVD IGSGSGRFLL WQANKNVESR NYLGLEIRQK LVKRANFWVN ELGLSNVHFI FANAMVSFEH LISSYPGPLE
201: IVSILCPDPH FKKRHQKRRV VQKPLVNSIL QNLKPGGKIF VQSDVLDVAQ DMRDQLDEES NVLQHMDTVD TEDGWLTENP MGIRTEREIH AEFEGARIYR
301: RLYQKRQLLP ET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)