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AT5G07110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : prenylated RAB acceptor 1.B6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
prenylated RAB acceptor 1.B6 (PRA1.B6); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.B5 (TAIR:AT5G01640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:15881eggNOG:COG5130eggNOG:KOG3142EMBL:AB010697
EMBL:AJ249728EMBL:AL163652EMBL:AY086209EMBL:AY127009
EMBL:BT000524EMBL:CP002688EnsemblPlants:AT5G07110EnsemblPlants:AT5G07110.1
entrez:830602GeneID:830602Genevisible:Q9LYQ4GO:GO:0005783
GO:GO:0005789GO:GO:0005794GO:GO:0016021GO:GO:0016192
Gramene:AT5G07110.1hmmpanther:PTHR19317hmmpanther:PTHR19317:SF9HOGENOM:HOG000238420
InParanoid:Q9LYQ4IntAct:Q9LYQ4InterPro:IPR004895KEGG:ath:AT5G07110
OMA:LRPWTVFPaxDb:Q9LYQ4Pfam:PF03208Pfam:Q9LYQ4
PhylomeDB:Q9LYQ4PIR:T48482PRIDE:Q9LYQ4PRO:PR:Q9LYQ4
ProteinModelPortal:Q9LYQ4Proteomes:UP000006548RefSeq:NP_196328.1STRING:3702.AT5G07110.1
TAIR:AT5G07110tair10-symbols:PRA1.B6TMHMM:TMhelixUniGene:At.28633
UniGene:At.69715UniProt:Q9LYQ4
Coordinates (TAIR10) chr5:+:2206121..2206771
Molecular Weight (calculated) 23139.20 Da
IEP (calculated) 8.51
GRAVY (calculated) 0.55
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MASPLLPTST TPDQLPGGDP QLLSSLRVLL SRVLATVRHA SADARPWAEL VDRSAFSRPP SLSEATSRVR KNFSYFRANY ITLVAILLAA SLLTHPFALF
101: LLASLAASWL FLYFFRPADQ PLVIGGRTFS DLETLGILCL STVVVMFMTS VGSLLMSTLA VGIMGVAIHG AFRAPEDLFL EEQEAIGSGL FAFFNNNASN
201: AAAAAIATSA MSRVRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)