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AT5G06320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26748395 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22430844 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NDR1/HIN1-like 3
Curator
Summary (TAIR10)
encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and Pseudomonas syringae pv. tomato DC3000. The gene product is localized to the plasma membrane.
Computational
Description (TAIR10)
NDR1/HIN1-like 3 (NHL3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to virus, defense response to bacterium, response to bacterium; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 2 (TAIR:AT3G11650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXCVeggNOG:ENOG410YGQVEMBL:AB006700EMBL:AF083702EMBL:AF264699EMBL:AF370332EMBL:BT000871
EMBL:CP002688EMBL:EU405623EMBL:EU405624EMBL:EU405627EMBL:EU405629EMBL:EU405630EMBL:EU405631
EMBL:EU405632EMBL:EU405633EMBL:EU405634EMBL:EU405635EMBL:EU405636EMBL:EU405637EMBL:EU405638
EMBL:EU405639EMBL:EU405640EMBL:EU405642EMBL:EU405643EMBL:EU405644EMBL:EU405646EMBL:EU405647
EMBL:EU405648EMBL:EU405649EMBL:EU405650EMBL:EU405652EMBL:EU405653EMBL:EU405654EMBL:EU405655
EMBL:EU405656EMBL:EU405657EMBL:EU405659EMBL:EU405662EMBL:EU405663EMBL:EU405664EMBL:EU405665
EMBL:EU405670EMBL:EU405671EMBL:EU405672EMBL:EU405676EMBL:EU405677EMBL:EU405678EMBL:EU405679
EMBL:EU405680EMBL:EU405681EMBL:EU405682EMBL:EU405683EMBL:EU405686EMBL:EU405687EMBL:EU405688
EMBL:EU405689EMBL:EU405690EMBL:EU405691EMBL:EU405692EMBL:EU405693EMBL:EU405694EMBL:EU405695
EMBL:EU405696EMBL:EU405697EMBL:EU405698EMBL:EU405700EMBL:EU405702EMBL:EU405703EMBL:EU405704
EMBL:EU405705EMBL:EU405706EMBL:EU405707EMBL:EU405708EMBL:EU405709EMBL:EU405710EMBL:EU405711
EMBL:EU405715EMBL:EU405717EnsemblPlants:AT5G06320EnsemblPlants:AT5G06320.1entrez:830520GeneID:830520GO:GO:0004871
GO:GO:0005774GO:GO:0005794GO:GO:0005886GO:GO:0007165GO:GO:0009506GO:GO:0009611GO:GO:0009617
GO:GO:0009751GO:GO:0009816GO:GO:0016021GO:GO:0042742GO:GO:0046658GO:GO:0051607Gramene:AT5G06320.1
hmmpanther:PTHR31415hmmpanther:PTHR31415:SF4HOGENOM:HOG000238502IntAct:Q9FNH6InterPro:IPR004864KEGG:ath:AT5G06320OMA:FHVTDAK
Pfam:PF03168PhylomeDB:Q9FNH6Proteomes:UP000006548RefSeq:NP_196250.1STRING:3702.AT5G06320.1SwissPalm:Q9FNH6TAIR:AT5G06320
tair10-symbols:NHL3TMHMM:TMhelixUniGene:At.66314UniGene:At.66731UniGene:At.70127UniGene:At.71403UniGene:At.72448
UniProt:Q9FNH6
Coordinates (TAIR10) chr5:-:1931016..1931711
Molecular Weight (calculated) 25948.70 Da
IEP (calculated) 9.54
GRAVY (calculated) -0.09
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MADLNGAYYG PSIPPPKKVS HSHGRRGGGC GCLGDCLGCC GCCILSVIFN ILITIAVLLG IAALIIWLIF RPNAIKFHVT DAKLTEFTLD PTNNLRYNLD
101: LNFTIRNPNR RIGVYYDEIE VRGYYGDQRF GMSNNISKFY QGHKNTTVVG TKLVGQQLVL LDGGERKDLN EDVNSQIYRI DAKLRLKIRF KFGLIKSWRF
201: KPKIKCDLKV PLTSNSTSGF VFQPTKCDVD F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)