AT5G04550.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF668) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF668); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT3G23160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:1303757..1305556 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67267.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.03 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||
| Length | 599 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSETWFRNL WRFPKKHDGH KDKAVLGVLA FEVASLLSKL VHLWQSLSDK NVARLRDEIT HSTGIKKLVS EDDDFIVRLI RDEMMENVEN VAKAVARLAR 101: KCNDPKLKCF ENCFSDMMKT GADPYGWQFG WKKMDKKAKK MERFISSNAS LYQETEILAD LEQTFKRMKS NESATDNLLE YQKKVTWKRH EVKNLRDVSL 201: WNRTYDYTVI LLVRSVFTIL SRTKHVFGIS YRVEASDVSS ADSDFIGRSH SVSTILTPVS HKSESSGLPR FASGPLGRFT GPASGSAATR STKMSDFLSG 301: SLSAESPKSG PLVAEKHKRF KFYSGQLGKI TSKSGPLIGM GKNNKKMGQT PERPSISSVK KQLKANRLTQ VGPFKGCMVS HDGITPLSTR ARNGARNSSA 401: EHHILEDNSN SVHVENLTLP SRPKLSDAAP NTLGTACLAL HYANVIIVIE RFVASPHLIG DDARDDLYNM LPASVRTSLR ERLKPYSKNL SSSTVYDPGL 501: AREWTDAMAG ILEWLGPLAH NMIKWQSERS YEHQSLVSRT HIVLAQTLFF ANQQKTEAII TELLVGLNYV WRFGRELNAK ALQECTSSKT LEKCLDTDN |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)