AT5G01780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.674 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate-dependent dioxygenase family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
2-oxoglutarate-dependent dioxygenase family protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase family protein (TAIR:AT3G14160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:302365..304129 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43537.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.43 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||
| Length | 387 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLNSIHRSFH LTSRHQIVLR LCSPSASRTI MSSSPHSPIP KTHRNLGCKN RRRRRASRFL HEESNGTTFE VGAGIGSPTS MVHFDSTNPS SSSKSSQSQN 101: LKIRKVRNHR NSGFKSRDQS PQRIKDPPPF DICSSVLERN DTSIKDWILA DETNRETVEV SNKHKVIRPG MVLLKDFLTP DIQVDIVKTC RELGVKPTGF 201: YQPGYSVGSK LHLQMMCLGR NWDPQTKYRK NTDIDSKAPE IPVTFNVLVE KAIREAHALI DRESGTEDAE RILPVMSPDI CIVNFYSETG RLGLHQDRDE 301: SEESIARGLP IVSFSIGDSA EFLYGEKRDV EEAQGVILES GDVLIFGGES RMIFHGVKSI IPNSAPMSLL NESKLRTGRL NLTFRHF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)