AT4G30430.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : tetraspanin9 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of TETRASPANIN family | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
tetraspanin9 (TET9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: tetraspanin8 (TAIR:AT2G23810.1); Has 465 Blast hits to 462 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 430; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:14879029..14880272 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31065.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.57 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.22 | ||||||||||||||||||||||||||||||||||||
| Length | 272 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVRFSNSLVG ILNFFVFLLS VPILSTGIWL SLKATTQCER FLDKPMIALG VFLMIIAIAG VVGSCCRVTW LLWSYLFVMF FLILIVLCFT IFAFVVTSKG 101: SGETIQGKAY KEYRLEAYSD WLQRRVNNAK HWNSIRSCLY ESKFCYNLEL VTANHTVSDF YKEDLTAFES GCCKPSNDCD FTYITSTTWN KTSGTHKNSD 201: CQLWDNEKHK LCYNCKACKA GFLDNLKAAW KRVAIVNIIF LVLLVVVYAM GCCAFRNNKE DRYGRSNGFN NS |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)