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AT4G28450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nucleotide binding;protein binding
Curator
Summary (TAIR10)
This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase
Computational
Description (TAIR10)
nucleotide binding;protein binding; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Sof1-like protein (InterPro:IPR007287), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 37337 Blast hits to 21127 proteins in 676 species: Archae - 38; Bacteria - 5948; Metazoa - 14528; Fungi - 7710; Plants - 4379; Viruses - 0; Other Eukaryotes - 4734 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNX6eggNOG:KOG0268EMBL:AF372943EMBL:AY045624EMBL:AY143901EMBL:CP002687EnsemblPlants:AT4G28450
EnsemblPlants:AT4G28450.1entrez:828962Gene3D:2.130.10.10GeneID:828962GO:GO:0080008Gramene:AT4G28450.1hmmpanther:PTHR22851
hmmpanther:PTHR22851:SF0InterPro:IPR001680InterPro:IPR007287InterPro:IPR013979InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775
InterPro:IPR020472KEGG:ath:AT4G28450KO:K11806ncoils:CoilOMA:IQRVPRNPfam:PF00400Pfam:PF04158
Pfam:PF08662Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q93VK1PRINTS:PR00320PROSITE:PS00678PROSITE:PS50082
PROSITE:PS50294Proteomes:UP000006548RefSeq:NP_567810.5scanprosite:PS00678SMART:SM00320SMR:Q93VK1STRING:3702.AT4G28450.1
SUPFAM:SSF50978TAIR:AT4G28450UniGene:At.2008UniProt:Q93VK1
Coordinates (TAIR10) chr4:-:14061724..14064582
Molecular Weight (calculated) 51361.10 Da
IEP (calculated) 9.93
GRAVY (calculated) -0.55
Length 452 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIKTLSRSV DEYTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGVS CMAKNPNYLK GIFSASMDGD IRLWDISSRR
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)